Os04g0395900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Poly-A polymerase/tRNA nucleotidyltransferase family protein.
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Os04g0395900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Poly-A polymerase/tRNA nucleotidyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.49 | 0.223 | 11.4 | -0.147 | 0.917 | 0.259 | -0.469 | 1.04 | -0.239 | 20.2 | 25.7 | 9 | -- | -- |
| 22.89 | 0.225 | 11.4 | -0.251 | 0.922 | 0.362 | -0.495 | -- | -0.259 | 20.3 | 26.34 | 10 | -- | -- |
| 23.16 | 0.224 | 11.4 | -0.117 | 0.918 | 0.236 | -- | 1.14 | -0.237 | 20.2 | 25.5 | 7 | -- | -- |
| 23.58 | 0.226 | 11.4 | -0.236 | 0.922 | 0.349 | -- | -- | -0.26 | 20.3 | 26.3 | 9 | -- | -- |
| 57.31 | 0.353 | 11.4 | -0.287 | -- | 0.776 | -- | -0.0328 | -0.279 | -- | 24.41 | 508 | -- | -- |
| 24.77 | 0.233 | 11.4 | -0.2 | 0.947 | -- | -0.442 | -- | -0.248 | 19.8 | -- | -- | -- | -- |
| 25.33 | 0.236 | 11.4 | -0.189 | 0.947 | -- | -- | -- | -0.248 | 19.8 | -- | -- | -- | -- |
| 57.09 | 0.352 | 11.4 | -0.317 | -- | 0.752 | -- | -- | -0.315 | -- | 24.42 | 496 | -- | -- |
| 24.97 | 0.233 | 11.4 | -- | 0.928 | 0.316 | -- | -- | -0.224 | 20.1 | 27.54 | 7 | -- | -- |
| 73.91 | 0.402 | 11.4 | -0.2 | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
| 26.27 | 0.24 | 11.4 | -- | 0.948 | -- | -- | -- | -0.227 | 19.8 | -- | -- | -- | -- |
| 59.95 | 0.361 | 11.4 | -- | -- | 0.711 | -- | -- | -0.289 | -- | 24.5 | 493 | -- | -- |
| 74.96 | 0.404 | 11.4 | -- | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.38 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 11 |
| 3 | 21.42 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 14 |
| 15 | 21.60 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 19 |
| 21 | 21.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 22 | 21.69 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 32 | 21.73 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 39 | 21.76 | temperature | 10 | 30 | > th | dose dependent | rect. | 8 | 20 |
| 40 | 21.77 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 45 | 21.79 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 87 | 21.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 104 | 21.98 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 124 | 22.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 129 | 22.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 8 |
| 141 | 22.06 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 23 |
| 150 | 22.08 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 155 | 22.09 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 157 | 22.10 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 158 | 22.10 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 1 |
| 179 | 22.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 189 | 22.14 | temperature | 25 | 10 | > th | dose dependent | sin | 0 | NA |
| 197 | 22.15 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 198 | 22.15 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 238 | 22.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 13 |
| 241 | 22.19 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 242 | 22.20 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 5 |
| 245 | 22.20 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 22 |
| 247 | 22.20 | wind | 7 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 251 | 22.20 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 266 | 22.22 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 295 | 22.24 | wind | 9 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 297 | 22.24 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 319 | 22.25 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 11 |
| 327 | 22.25 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 335 | 22.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 19 |
| 339 | 22.26 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 7 |
| 358 | 22.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 13 |
| 366 | 22.28 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 412 | 22.31 | wind | 9 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 415 | 22.31 | wind | 7 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 419 | 22.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 466 | 22.33 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 519 | 22.36 | wind | 7 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 530 | 22.37 | temperature | 30 | 10 | < th | dose independent | rect. | 4 | 22 |
| 568 | 22.39 | humidity | 50 | 270 | > th | dose independent | rect. | 3 | 18 |
| 623 | 22.41 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 5 | 18 |
| 646 | 22.41 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 665 | 22.42 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 680 | 22.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 727 | 22.44 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 2 |
| 782 | 22.45 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 14 | 9 |
| 816 | 22.46 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 854 | 22.48 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 3 |
| 877 | 22.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 12 |
| 879 | 22.48 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 13 |
| 881 | 22.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 15 |
| 897 | 22.49 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 9 |
| 907 | 22.49 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 17 |
| 934 | 22.49 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 955 | 22.50 | wind | 5 | 270 | < th | dose independent | rect. | 8 | 9 |
| 979 | 22.50 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 8 |