Os04g0395700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0395700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.85 | 0.252 | 10.2 | 1.21 | 0.731 | -0.892 | -0.37 | -0.0826 | 0.25 | 17.6 | 8.976 | 991 | -- | -- |
| 28.85 | 0.25 | 10.2 | 1.23 | 0.699 | -0.876 | -0.378 | -- | 0.255 | 17.5 | 9.154 | 1076 | -- | -- |
| 29.18 | 0.252 | 10.2 | 1.21 | 0.737 | -0.896 | -- | -0.0933 | 0.247 | 17.6 | 9.894 | 971 | -- | -- |
| 29.19 | 0.252 | 10.2 | 1.22 | 0.734 | -0.895 | -- | -- | 0.251 | 17.6 | 11.23 | 970 | -- | -- |
| 52.84 | 0.339 | 10.2 | 1.27 | -- | -0.96 | -- | 0.0409 | 0.25 | -- | 14.7 | 1226 | -- | -- |
| 40.6 | 0.299 | 10.2 | 0.977 | 0.733 | -- | -0.312 | -- | 0.106 | 16.8 | -- | -- | -- | -- |
| 40.85 | 0.299 | 10.2 | 0.975 | 0.73 | -- | -- | -- | 0.105 | 16.8 | -- | -- | -- | -- |
| 52.73 | 0.338 | 10.2 | 1.25 | -- | -0.98 | -- | -- | 0.262 | -- | 13.91 | 1234 | -- | -- |
| 63.49 | 0.371 | 10.2 | -- | 0.822 | -0.439 | -- | -- | 0.0506 | 17 | 10.95 | 467 | -- | -- |
| 69.09 | 0.388 | 10.2 | 0.948 | -- | -- | -- | -- | 0.0857 | -- | -- | -- | -- | -- |
| 65.93 | 0.38 | 10.2 | -- | 0.712 | -- | -- | -- | -0.00397 | 16.8 | -- | -- | -- | -- |
| 86.98 | 0.434 | 10.2 | -- | -- | -0.388 | -- | -- | 0.0302 | -- | 24.1 | 1246 | -- | -- |
| 92.79 | 0.45 | 10.2 | -- | -- | -- | -- | -- | -0.0195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 2 | 28.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 30 | 28.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 36 | 28.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 38 | 28.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 44 | 28.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 57 | 28.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 64 | 29.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 77 | 29.09 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 104 | 29.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 16 |
| 140 | 29.25 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 219 | 29.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 307 | 29.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 319 | 29.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 320 | 29.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 380 | 29.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 576 | 29.54 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 628 | 29.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 727 | 29.63 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 815 | 29.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 818 | 29.68 | temperature | 15 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 876 | 29.71 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 1 |