Os04g0395400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0395400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 192.67 | 0.652 | 4.05 | -1.73 | 0.667 | -0.896 | -0.991 | -0.558 | -0.852 | 8.14 | 0.3184 | 6425 | -- | -- |
| 193.08 | 0.647 | 4.05 | -1.76 | 0.666 | -0.903 | -1.01 | -- | -0.848 | 8.15 | 0.3028 | 6415 | -- | -- |
| 195.64 | 0.651 | 4.05 | -1.76 | 0.666 | -0.906 | -- | -0.55 | -0.854 | 8.19 | 0.3216 | 6420 | -- | -- |
| 195.82 | 0.652 | 4.05 | -1.81 | 0.674 | -0.809 | -- | -- | -0.856 | 8.19 | 0.3055 | 7009 | -- | -- |
| 220.19 | 0.691 | 4.07 | -1.76 | -- | -0.919 | -- | -0.475 | -0.847 | -- | 0.3204 | 6420 | -- | -- |
| 210.25 | 0.68 | 4.02 | -1.87 | 0.674 | -- | -1.05 | -- | -0.732 | 8.02 | -- | -- | -- | -- |
| 213.53 | 0.684 | 4.02 | -1.9 | 0.674 | -- | -- | -- | -0.73 | 8.13 | -- | -- | -- | -- |
| 220.48 | 0.692 | 4.07 | -1.79 | -- | -0.928 | -- | -- | -0.853 | -- | 0.3166 | 6420 | -- | -- |
| 226.15 | 0.7 | 4.03 | -- | 0.674 | -1.74 | -- | -- | -0.8 | 8.29 | 0.8338 | 27032 | -- | -- |
| 238.45 | 0.722 | 4.04 | -1.89 | -- | -- | -- | -- | -0.722 | -- | -- | -- | -- | -- |
| 308.67 | 0.822 | 3.97 | -- | 0.664 | -- | -- | -- | -0.519 | 8.33 | -- | -- | -- | -- |
| 251.16 | 0.738 | 4.06 | -- | -- | -1.72 | -- | -- | -0.799 | -- | 0.8478 | 27033 | -- | -- |
| 333.11 | 0.852 | 3.99 | -- | -- | -- | -- | -- | -0.512 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 178.68 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 3 | 179.27 | humidity | 80 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 4 | 179.48 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 5 | 179.51 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 7 | 179.63 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 8 | 179.80 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 26 | 180.59 | humidity | 90 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 45 | 180.99 | humidity | 70 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 107 | 181.62 | humidity | 70 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 165 | 181.96 | humidity | 70 | 14400 | > th | dose independent | rect. | 13 | 13 |
| 198 | 182.06 | humidity | 60 | 14400 | > th | dose dependent | sin | 19 | NA |
| 482 | 182.97 | humidity | 70 | 14400 | > th | dose independent | sin | 16 | NA |
| 492 | 182.99 | humidity | 70 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 505 | 183.03 | humidity | 70 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 578 | 183.15 | humidity | 60 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 592 | 183.17 | humidity | 90 | 14400 | < th | dose dependent | sin | 19 | NA |
| 773 | 183.50 | humidity | 60 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 774 | 183.51 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 14 |
| 810 | 183.56 | humidity | 60 | 14400 | > th | dose dependent | no | NA | NA |
| 820 | 183.58 | humidity | 80 | 14400 | > th | dose independent | rect. | 7 | 15 |
| 877 | 183.65 | humidity | 60 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 885 | 183.66 | humidity | 60 | 14400 | > th | dose dependent | rect. | 14 | 23 |