Os04g0393900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).
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Os04g0393900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.03 | 0.358 | 8.85 | -1.18 | 0.336 | -0.718 | 0.648 | -0.364 | -0.142 | 13 | 70.5 | 1322 | -- | -- |
| 58.31 | 0.356 | 8.85 | -1.23 | 0.347 | -0.731 | 0.614 | -- | -0.159 | 13 | 71 | 1309 | -- | -- |
| 59.67 | 0.36 | 8.85 | -1.15 | 0.362 | -0.723 | -- | -0.292 | -0.142 | 13.2 | 71.09 | 1278 | -- | -- |
| 59.81 | 0.36 | 8.85 | -1.21 | 0.346 | -0.732 | -- | -- | -0.153 | 13.4 | 70.65 | 1309 | -- | -- |
| 62.08 | 0.367 | 8.85 | -1.15 | -- | -0.734 | -- | -0.176 | -0.138 | -- | 73 | 1543 | -- | -- |
| 78.97 | 0.417 | 8.83 | -1.06 | 0.228 | -- | 0.462 | -- | -0.0515 | 12.6 | -- | -- | -- | -- |
| 79.83 | 0.418 | 8.83 | -1.04 | 0.23 | -- | -- | -- | -0.0485 | 13.2 | -- | -- | -- | -- |
| 62.15 | 0.367 | 8.86 | -1.19 | -- | -0.792 | -- | -- | -0.145 | -- | 72.84 | 1544 | -- | -- |
| 96.05 | 0.456 | 8.82 | -- | 0.309 | -0.588 | -- | -- | -0.00425 | 13.6 | 73 | 1348 | -- | -- |
| 83.1 | 0.426 | 8.84 | -1.05 | -- | -- | -- | -- | -0.0532 | -- | -- | -- | -- | -- |
| 108.53 | 0.487 | 8.81 | -- | 0.248 | -- | -- | -- | 0.0677 | 13.3 | -- | -- | -- | -- |
| 97.63 | 0.46 | 8.82 | -- | -- | -0.666 | -- | -- | 0.00428 | -- | 75 | 1593 | -- | -- |
| 112.32 | 0.495 | 8.81 | -- | -- | -- | -- | -- | 0.0636 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.96 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 2 | 57.00 | humidity | 70.0 | 1440 | < th | dose independent | sin | 16 | NA |
| 3 | 57.03 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 15 | 57.07 | humidity | 70.0 | 1440 | > th | dose independent | sin | 16 | NA |
| 21 | 57.19 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 25 | 57.19 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 27 | 57.20 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 51 | 57.52 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 52 | 57.53 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 115 | 57.78 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 136 | 57.82 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 140 | 57.88 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 141 | 57.89 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 146 | 57.90 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 14 | 15 |
| 147 | 57.91 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 14 | 13 |
| 226 | 58.38 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 236 | 58.42 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 237 | 58.43 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 10 |
| 239 | 58.44 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 241 | 58.44 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 2 | 8 |
| 251 | 58.49 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 253 | 58.52 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 254 | 58.53 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 2 | 8 |
| 255 | 58.54 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 5 | 16 |
| 265 | 58.60 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 266 | 58.60 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 268 | 58.61 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 6 |
| 273 | 58.63 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 274 | 58.63 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 289 | 58.65 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 299 | 58.68 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 300 | 58.68 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 306 | 58.68 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 324 | 58.68 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 327 | 58.69 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 355 | 58.69 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 14 | 18 |
| 397 | 58.75 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 404 | 58.77 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 414 | 58.79 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 443 | 58.81 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 445 | 58.82 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 6 |
| 451 | 58.83 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 454 | 58.83 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 24 | 12 |
| 482 | 58.87 | humidity | 70.0 | 1440 | < th | dose independent | no | NA | NA |
| 551 | 58.87 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 586 | 58.93 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 594 | 58.95 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 18 |
| 612 | 58.98 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 639 | 59.01 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 14 | 14 |
| 679 | 59.06 | humidity | 60.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 767 | 59.14 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 791 | 59.16 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 884 | 59.25 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 885 | 59.25 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 968 | 59.33 | wind | 3.0 | 43200 | > th | dose independent | rect. | 24 | 10 |
| 983 | 59.34 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 6 |
| 985 | 59.34 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 6 |
| 999 | 59.36 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 1 |