Os04g0392900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0392900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.84	(0.0372)	R²	:	0.602
β₁	:	2.25	(0.186)	R²_dD	:	0.297	R²_D	:	0.107
β₂	:	1.3	(0.0874)	R²_dC	:	0.194	R²_C	:	0.131
β₃	:	-1.55	(0.102)	R²_dE	:	0.255	R²_E	:	0.27
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-3.01	(0.407)	R²_dD*E	:	0.108	R²_D*E	:	-0.234
γ₁	:	0.324	(0.0865)	R²_dN8	:	0.0233	R²_N8	:	0.0232
σ	:	0.634
deviance	:	185.32
__

_____

C
peak time of C	:	16.4
E
wheather	:	temperature
threshold	:	22.24
memory length	:	1276
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
180.86	0.632	4.84	2.29	1.29	-1.54	1.3	-3.15	0.329	16.5	22.3	1274	--	--
207.48	0.671	4.91	1.4	1.24	-1.52	0.601	--	0.156	16.1	22.4	1309	--	--
185.32	0.634	4.84	2.25	1.3	-1.55	--	-3.01	0.324	16.4	22.24	1276	--	--
207.51	0.671	4.92	1.29	1.27	-1.53	--	--	0.116	16.4	22.3	1314	--	--
257.61	0.748	4.84	2.15	--	-1.2	--	-2.42	0.278	--	23.2	435	--	--
295.02	0.805	4.83	1.79	1.19	--	1.1	--	0.595	16.8	--	--	--	--
298.08	0.809	4.82	1.8	1.19	--	--	--	0.6	16.7	--	--	--	--
248.11	0.734	4.96	1.6	--	-1.31	--	--	0.314	--	26.47	340	--	--
236.94	0.717	4.98	--	1.28	-1.77	--	--	-0.00565	16.9	21.8	2891	--	--
373.24	0.903	4.81	1.75	--	--	--	--	0.569	--	--	--	--	--
383.24	0.916	4.87	--	1.16	--	--	--	0.4	16.8	--	--	--	--
292.42	0.796	4.95	--	--	-1.51	--	--	-0.0226	--	26.2	324	--	--
454.26	0.995	4.86	--	--	--	--	--	0.375	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	185.00	temperature	25	1440	< th	dose dependent	rect.	20	4
7	185.41	temperature	20	1440	> th	dose dependent	rect.	23	1
15	185.90	temperature	25	1440	< th	dose dependent	sin	14	NA
22	186.17	temperature	25	1440	< th	dose dependent	rect.	16	14
43	186.56	temperature	10	1440	> th	dose dependent	rect.	23	1
57	186.79	temperature	20	1440	> th	dose dependent	rect.	20	10
60	186.82	temperature	25	1440	< th	dose dependent	rect.	10	20
99	187.27	temperature	25	1440	< th	dose dependent	rect.	18	18
155	187.59	temperature	10	1440	> th	dose dependent	rect.	21	5
256	188.10	temperature	25	1440	< th	dose dependent	no	NA	NA
262	188.12	temperature	25	1440	< th	dose dependent	rect.	3	23
277	188.22	temperature	25	1440	< th	dose dependent	rect.	1	23
341	188.73	temperature	25	1440	< th	dose dependent	rect.	23	23
456	189.92	temperature	20	1440	> th	dose dependent	rect.	5	1
458	189.94	temperature	10	1440	> th	dose dependent	sin	11	NA
550	190.70	temperature	30	90	< th	dose dependent	rect.	6	23
658	192.00	temperature	30	270	< th	dose dependent	rect.	21	23
682	192.25	temperature	20	1440	> th	dose dependent	rect.	1	1
791	193.30	temperature	30	1440	< th	dose dependent	rect.	4	2
809	193.41	temperature	30	270	< th	dose dependent	rect.	11	23
839	193.61	temperature	30	270	< th	dose dependent	no	NA	NA
880	193.87	temperature	30	270	< th	dose dependent	rect.	16	23