Os04g0392500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0392500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.74 | 0.417 | 2.94 | 0.0791 | 0.0569 | 2.21 | 0.814 | 4.91 | 0.0143 | 16.7 | 90.11 | 1632 | 3.45 | 0.0268 |
| 83.29 | 0.425 | 2.94 | 0.0687 | 0.0859 | 2.96 | 0.529 | -- | 0.0413 | 16.4 | 89.92 | 1630 | 3.45 | 0.0166 |
| 80.24 | 0.417 | 2.93 | 0.082 | 0.0682 | 2.29 | -- | 4.27 | 0.0227 | 15.8 | 90.35 | 1640 | 3.44 | 0.0164 |
| 84.04 | 0.427 | 2.94 | 0.0787 | 0.0806 | 2.96 | -- | -- | 0.0393 | 16.2 | 90.05 | 1642 | 3.45 | 0.0116 |
| 80.49 | 0.418 | 2.93 | 0.0797 | -- | 2.26 | -- | 4.36 | 0.0218 | -- | 90.37 | 1641 | 3.44 | 0.0158 |
| 124.13 | 0.522 | 2.96 | 0.156 | 0.00994 | -- | 0.432 | -- | -0.0486 | 15.4 | -- | -- | -- | -- |
| 124.47 | 0.522 | 2.96 | 0.164 | 0.0663 | -- | -- | -- | -0.0464 | 9.73 | -- | -- | -- | -- |
| 84.39 | 0.428 | 2.94 | 0.0762 | -- | 2.93 | -- | -- | 0.036 | -- | 90.05 | 1633 | 3.45 | 0.0157 |
| 84.2 | 0.427 | 2.94 | -- | 0.0784 | 2.98 | -- | -- | 0.0293 | 16 | 89.91 | 1636 | 3.45 | 0.0166 |
| 124.73 | 0.522 | 2.96 | 0.163 | -- | -- | -- | -- | -0.0464 | -- | -- | -- | -- | -- |
| 125.17 | 0.523 | 2.96 | -- | 0.066 | -- | -- | -- | -0.0647 | 9.54 | -- | -- | -- | -- |
| 84.53 | 0.428 | 2.94 | -- | -- | 2.95 | -- | -- | 0.0261 | -- | 89.91 | 1639 | 3.45 | 0.0126 |
| 125.43 | 0.523 | 2.96 | -- | -- | -- | -- | -- | -0.0645 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.37 | temperature | 20.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 3 | 86.38 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 14 | 87.82 | wind | 7.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 15 | 87.93 | wind | 7.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 18 | 88.58 | humidity | 80.0 | 30 | < th | dose independent | rect. | 24 | 7 |
| 22 | 88.84 | humidity | 80.0 | 10 | < th | dose independent | rect. | 20 | 11 |
| 38 | 89.87 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 55 | 90.55 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 56 | 90.58 | humidity | 80.0 | 270 | < th | dose independent | rect. | 1 | 2 |
| 57 | 90.59 | humidity | 80.0 | 270 | < th | dose independent | rect. | 23 | 5 |
| 58 | 90.61 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 59 | 90.65 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 24 | 7 |
| 65 | 90.95 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 77 | 91.37 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 80 | 91.45 | wind | 7.0 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 82 | 91.51 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 83 | 91.53 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 88 | 91.78 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 120 | 92.57 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 132 | 92.94 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 133 | 92.94 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 140 | 92.98 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 147 | 92.98 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 151 | 92.99 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 154 | 93.00 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 156 | 93.02 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 165 | 93.03 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 2 | 5 |
| 207 | 93.25 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 208 | 93.28 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 211 | 93.29 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 212 | 93.29 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 252 | 93.40 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 265 | 93.45 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 269 | 93.47 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 24 | 7 |
| 313 | 93.71 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 8 |
| 346 | 93.81 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 20 | 11 |
| 347 | 93.84 | wind | 7.0 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 420 | 94.34 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 433 | 94.40 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 438 | 94.43 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 483 | 94.80 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 9 |
| 485 | 94.84 | wind | 9.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 542 | 95.27 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 578 | 95.72 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 609 | 95.91 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 616 | 95.95 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 713 | 96.88 | wind | 5.0 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 720 | 96.98 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 747 | 97.34 | wind | 5.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 771 | 97.53 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 790 | 97.65 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 809 | 97.79 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 826 | 97.89 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 829 | 97.93 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 843 | 98.00 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 897 | 98.24 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 911 | 98.29 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 927 | 98.35 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 942 | 98.38 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 8 |
| 950 | 98.41 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 955 | 98.43 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 968 | 98.50 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 974 | 98.52 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 3 | NA |