Os04g0390600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Oligopeptide transporter OPT superfamily protein.
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Os04g0390600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Oligopeptide transporter OPT superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.38 | 0.263 | 8.86 | 1.95 | 0.295 | -0.556 | -0.306 | 1.01 | 0.638 | 20.1 | 26.3 | 1047 | -- | -- |
| 32.14 | 0.264 | 8.89 | 1.7 | 0.314 | -0.474 | -0.182 | -- | 0.558 | 19.8 | 26.2 | 1016 | -- | -- |
| 31.63 | 0.262 | 8.86 | 1.94 | 0.293 | -0.549 | -- | 0.961 | 0.634 | 19.8 | 26.3 | 1054 | -- | -- |
| 32.18 | 0.264 | 8.89 | 1.7 | 0.301 | -0.475 | -- | -- | 0.552 | 19.8 | 26.2 | 1016 | -- | -- |
| 34.96 | 0.275 | 8.85 | 1.95 | -- | -0.494 | -- | 0.984 | 0.622 | -- | 26.23 | 1224 | -- | -- |
| 37.8 | 0.288 | 8.92 | 1.55 | 0.237 | -- | 0.0731 | -- | 0.415 | 17.8 | -- | -- | -- | -- |
| 37.81 | 0.288 | 8.92 | 1.55 | 0.238 | -- | -- | -- | 0.415 | 17.9 | -- | -- | -- | -- |
| 35.6 | 0.278 | 8.89 | 1.69 | -- | -0.394 | -- | -- | 0.516 | -- | 26.4 | 1270 | -- | -- |
| 100.29 | 0.469 | 8.96 | -- | 0.171 | 0.124 | -- | -- | 0.205 | 20.2 | 26.2 | 1016 | -- | -- |
| 40.74 | 0.298 | 8.91 | 1.54 | -- | -- | -- | -- | 0.41 | -- | -- | -- | -- | -- |
| 101.23 | 0.471 | 8.96 | -- | 0.215 | -- | -- | -- | 0.242 | 18.3 | -- | -- | -- | -- |
| 63.65 | 0.372 | 9.02 | -- | -- | 0.93 | -- | -- | -0.078 | -- | 21.59 | 47520 | -- | -- |
| 103.63 | 0.475 | 8.95 | -- | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.30 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 7 |
| 2 | 29.39 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 5 |
| 5 | 29.46 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 8 |
| 12 | 29.59 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 5 |
| 56 | 30.13 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 62 | 30.17 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 95 | 30.50 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 99 | 30.51 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 116 | 30.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 142 | 30.89 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 18 |
| 151 | 30.93 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 296 | 31.40 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 1 |
| 313 | 31.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 335 | 31.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 18 |
| 341 | 31.53 | temperature | 20 | 90 | > th | dose dependent | sin | 11 | NA |
| 392 | 31.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 408 | 31.70 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 13 |
| 412 | 31.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 7 |
| 415 | 31.71 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 468 | 31.82 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 10 |
| 488 | 31.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 495 | 31.86 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 558 | 31.95 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 616 | 32.04 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 679 | 32.13 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 9 |
| 772 | 32.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 790 | 32.27 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 13 |
| 845 | 32.32 | temperature | 10 | 720 | > th | dose dependent | sin | 18 | NA |
| 847 | 32.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 876 | 32.36 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 915 | 32.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 920 | 32.42 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |