Os04g0389500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os04g0389500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.5 | 0.35 | 9.27 | -1.14 | 0.258 | -1.61 | 0.824 | -2.24 | -0.214 | 23.8 | 26.84 | 80 | -- | -- |
| 61.03 | 0.367 | 9.31 | -1.49 | 0.325 | -1.39 | 0.0849 | -- | -0.272 | 21.7 | 27.1 | 80 | -- | -- |
| 56.92 | 0.351 | 9.28 | -1.27 | 0.263 | -1.52 | -- | -1.61 | -0.222 | 21.2 | 26.03 | 69 | -- | -- |
| 61.06 | 0.366 | 9.31 | -1.49 | 0.325 | -1.39 | -- | -- | -0.271 | 21.6 | 27.1 | 80 | -- | -- |
| 59.17 | 0.358 | 9.27 | -1.22 | -- | -1.49 | -- | -1.77 | -0.204 | -- | 26.17 | 169 | -- | -- |
| 89.09 | 0.442 | 9.24 | -1.16 | 0.396 | -- | -0.205 | -- | 0.033 | 17.1 | -- | -- | -- | -- |
| 89.2 | 0.442 | 9.24 | -1.16 | 0.394 | -- | -- | -- | 0.032 | 17.1 | -- | -- | -- | -- |
| 63.6 | 0.371 | 9.3 | -1.51 | -- | -1.37 | -- | -- | -0.268 | -- | 27 | 166 | -- | -- |
| 114.04 | 0.5 | 9.25 | -- | 0.307 | -0.81 | -- | -- | 0.00523 | 19.3 | 27.1 | 80 | -- | -- |
| 97.34 | 0.461 | 9.24 | -1.17 | -- | -- | -- | -- | 0.022 | -- | -- | -- | -- | -- |
| 124.61 | 0.522 | 9.21 | -- | 0.415 | -- | -- | -- | 0.161 | 17 | -- | -- | -- | -- |
| 118.61 | 0.507 | 9.24 | -- | -- | -0.875 | -- | -- | -0.00782 | -- | 27.36 | 133 | -- | -- |
| 133.65 | 0.54 | 9.21 | -- | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 3 | 54.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 7 | 54.86 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 26 | 56.20 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 31 | 56.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 35 | 56.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 42 | 56.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 74 | 57.46 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 97 | 57.73 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 121 | 57.93 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 139 | 58.10 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 144 | 58.13 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 145 | 58.13 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 149 | 58.14 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 161 | 58.22 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 166 | 58.26 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 179 | 58.33 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 464 | 60.65 | temperature | 25 | 720 | < th | dose dependent | sin | 20 | NA |
| 496 | 60.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 517 | 60.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 527 | 61.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 545 | 61.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 553 | 61.23 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 559 | 61.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 13 |
| 562 | 61.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 610 | 61.61 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 613 | 61.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 635 | 61.74 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 652 | 61.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 671 | 61.92 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 692 | 62.03 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 13 |
| 701 | 62.07 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 18 |
| 709 | 62.11 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 730 | 62.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 771 | 62.46 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 11 |
| 817 | 62.62 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 843 | 62.69 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 8 |
| 873 | 62.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 882 | 62.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 890 | 62.84 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 916 | 62.92 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 18 |
| 920 | 62.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 924 | 62.93 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 21 |
| 969 | 63.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |