Os04g0388800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0388800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.65 | 0.174 | 12.7 | 0.617 | 0.236 | -0.409 | 0.111 | -0.48 | 0.335 | 1.77 | 5 | 4368 | -- | -- |
| 13.78 | 0.173 | 12.8 | 0.618 | 0.238 | -0.35 | 0.114 | -- | 0.332 | 1.73 | 4.7 | 4400 | -- | -- |
| 13.7 | 0.172 | 12.7 | 0.613 | 0.236 | -0.411 | -- | -0.485 | 0.335 | 1.7 | 5.012 | 4368 | -- | -- |
| 13.83 | 0.173 | 12.8 | 0.623 | 0.237 | -0.349 | -- | -- | 0.331 | 1.68 | 4.712 | 4368 | -- | -- |
| 16.73 | 0.19 | 12.7 | 0.601 | -- | -0.498 | -- | -0.771 | 0.357 | -- | 5.171 | 4511 | -- | -- |
| 15.68 | 0.186 | 12.8 | 0.742 | 0.253 | -- | 0.133 | -- | 0.342 | 1.54 | -- | -- | -- | -- |
| 15.75 | 0.186 | 12.8 | 0.738 | 0.253 | -- | -- | -- | 0.341 | 1.46 | -- | -- | -- | -- |
| 17.03 | 0.192 | 12.7 | 0.607 | -- | -0.391 | -- | -- | 0.338 | -- | 5.335 | 4516 | -- | -- |
| 17.76 | 0.196 | 12.8 | -- | 0.244 | -0.586 | -- | -- | 0.135 | 1.49 | 5.6 | 47520 | -- | -- |
| 19.67 | 0.207 | 12.7 | 0.748 | -- | -- | -- | -- | 0.347 | -- | -- | -- | -- | -- |
| 30.1 | 0.257 | 12.8 | -- | 0.266 | -- | -- | -- | 0.259 | 1.55 | -- | -- | -- | -- |
| 21.42 | 0.216 | 12.8 | -- | -- | -0.601 | -- | -- | 0.135 | -- | 5.6 | 47520 | -- | -- |
| 34.42 | 0.274 | 12.8 | -- | -- | -- | -- | -- | 0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.26 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 19 |
| 7 | 13.39 | wind | 5 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 12 | 13.42 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 15 | 13.43 | wind | 5 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 29 | 13.50 | wind | 5 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 42 | 13.52 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 19 |
| 45 | 13.53 | wind | 5 | 4320 | > th | dose independent | sin | 11 | NA |
| 46 | 13.53 | wind | 5 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 51 | 13.54 | wind | 5 | 4320 | < th | dose independent | sin | 11 | NA |
| 65 | 13.55 | wind | 5 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 72 | 13.55 | wind | 9 | 4320 | > th | dose dependent | rect. | 20 | 19 |
| 115 | 13.59 | wind | 5 | 4320 | > th | dose dependent | sin | 5 | NA |
| 157 | 13.63 | wind | 7 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 161 | 13.63 | wind | 7 | 4320 | > th | dose dependent | rect. | 13 | 21 |
| 198 | 13.66 | wind | 7 | 4320 | < th | dose independent | rect. | 11 | 23 |
| 201 | 13.66 | wind | 5 | 4320 | > th | dose dependent | no | NA | NA |
| 204 | 13.66 | wind | 7 | 4320 | > th | dose dependent | rect. | 13 | 18 |
| 211 | 13.66 | wind | 5 | 4320 | > th | dose dependent | rect. | 23 | 22 |
| 218 | 13.67 | wind | 7 | 4320 | > th | dose independent | rect. | 23 | 16 |
| 231 | 13.67 | wind | 5 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 232 | 13.67 | wind | 5 | 4320 | > th | dose dependent | rect. | 7 | 23 |
| 244 | 13.68 | wind | 7 | 4320 | < th | dose independent | rect. | 2 | 14 |
| 279 | 13.70 | wind | 7 | 4320 | < th | dose independent | rect. | 24 | 21 |
| 280 | 13.70 | wind | 7 | 4320 | > th | dose independent | rect. | 12 | 22 |
| 301 | 13.71 | wind | 7 | 4320 | < th | dose independent | no | NA | NA |
| 303 | 13.71 | wind | 7 | 4320 | > th | dose independent | rect. | 2 | 14 |
| 314 | 13.71 | wind | 7 | 4320 | < th | dose independent | rect. | 3 | 22 |
| 317 | 13.71 | wind | 7 | 4320 | < th | dose independent | rect. | 9 | 23 |
| 336 | 13.72 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 19 |
| 344 | 13.72 | wind | 7 | 4320 | < th | dose independent | rect. | 7 | 23 |
| 372 | 13.73 | wind | 7 | 4320 | < th | dose independent | rect. | 2 | 19 |
| 379 | 13.73 | wind | 7 | 4320 | > th | dose independent | rect. | 24 | 21 |
| 407 | 13.74 | wind | 7 | 4320 | > th | dose independent | no | NA | NA |
| 408 | 13.74 | wind | 7 | 4320 | < th | dose independent | sin | 4 | NA |
| 434 | 13.74 | wind | 7 | 4320 | > th | dose independent | rect. | 2 | 23 |
| 483 | 13.75 | wind | 7 | 4320 | > th | dose independent | rect. | 9 | 22 |
| 488 | 13.75 | wind | 7 | 4320 | > th | dose independent | rect. | 7 | 23 |
| 496 | 13.75 | wind | 7 | 4320 | > th | dose dependent | rect. | 12 | 4 |
| 535 | 13.76 | wind | 7 | 4320 | > th | dose independent | rect. | 2 | 19 |
| 558 | 13.76 | wind | 5 | 4320 | > th | dose dependent | sin | 10 | NA |
| 564 | 13.76 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 11 |
| 583 | 13.77 | wind | 7 | 4320 | > th | dose independent | sin | 5 | NA |
| 664 | 13.78 | wind | 7 | 4320 | > th | dose dependent | rect. | 12 | 13 |
| 718 | 13.79 | wind | 7 | 4320 | > th | dose dependent | rect. | 12 | 9 |
| 827 | 13.82 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 876 | 13.83 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 8 |
| 930 | 13.84 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 933 | 13.84 | wind | 7 | 4320 | < th | dose independent | rect. | 11 | 14 |
| 957 | 13.84 | wind | 7 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 958 | 13.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 1 |