Os04g0388700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nodulin-like domain containing protein.
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Os04g0388700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nodulin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.86 | 0.647 | 8.1 | 0.937 | 3.49 | -1.67 | 1.66 | 5.35 | 0.211 | 16.4 | 25.54 | 2734 | -- | -- |
| 191.54 | 0.645 | 8.13 | 0.264 | 3.46 | -1.88 | 1.35 | -- | 0.451 | 16.2 | 14.65 | 9896 | -- | -- |
| 197.12 | 0.654 | 8.1 | 0.917 | 3.5 | -1.68 | -- | 5.33 | 0.188 | 16.4 | 25.8 | 2735 | -- | -- |
| 197.31 | 0.654 | 8.16 | 0.0948 | 3.52 | -1.84 | -- | -- | 0.362 | 16.2 | 13.9 | 8410 | -- | -- |
| 800.55 | 1.32 | 8.33 | -1.38 | -- | 2.47 | -- | 0.253 | -0.566 | -- | 23.7 | 2677 | -- | -- |
| 247.84 | 0.738 | 8.29 | -0.9 | 3.59 | -- | 1.71 | -- | -0.188 | 16.2 | -- | -- | -- | -- |
| 255.88 | 0.749 | 8.28 | -0.882 | 3.6 | -- | -- | -- | -0.179 | 16.2 | -- | -- | -- | -- |
| 800.58 | 1.32 | 8.33 | -1.42 | -- | 2.49 | -- | -- | -0.576 | -- | 23.7 | 9871 | -- | -- |
| 197.49 | 0.655 | 8.16 | -- | 3.53 | -1.8 | -- | -- | 0.349 | 16.3 | 13.5 | 8407 | -- | -- |
| 956.55 | 1.45 | 8.26 | -1.03 | -- | -- | -- | -- | -0.275 | -- | -- | -- | -- | -- |
| 276.4 | 0.778 | 8.26 | -- | 3.62 | -- | -- | -- | -0.0808 | 16.2 | -- | -- | -- | -- |
| 846.4 | 1.36 | 8.29 | -- | -- | 2.31 | -- | -- | -0.388 | -- | 23.9 | 8418 | -- | -- |
| 984.37 | 1.46 | 8.24 | -- | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.89 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 10 |
| 13 | 179.08 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 30 | 180.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 33 | 180.56 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 50 | 180.75 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 62 | 180.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 68 | 181.10 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 72 | 181.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 123 | 184.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 130 | 184.33 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 146 | 184.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 147 | 184.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 148 | 184.68 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 151 | 184.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 153 | 184.88 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 170 | 185.46 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 203 | 185.87 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 208 | 185.99 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 217 | 186.25 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 228 | 186.36 | radiation | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 238 | 186.51 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 240 | 186.52 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 246 | 186.59 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 247 | 186.59 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 255 | 186.62 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 258 | 186.63 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 262 | 186.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 265 | 186.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 10 |
| 267 | 186.67 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 279 | 186.67 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 282 | 186.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 312 | 186.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 401 | 187.00 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 409 | 187.02 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 416 | 187.09 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 417 | 187.10 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 420 | 187.13 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 439 | 187.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 561 | 187.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 563 | 187.70 | radiation | 40 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 574 | 187.80 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 600 | 187.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 650 | 188.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 678 | 188.19 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 699 | 188.20 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 746 | 188.40 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 765 | 188.44 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 10 |
| 774 | 188.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 19 |
| 793 | 188.47 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 17 |
| 798 | 188.47 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 23 |
| 805 | 188.48 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 808 | 188.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 816 | 188.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 21 |
| 837 | 188.51 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 854 | 188.52 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 862 | 188.53 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 863 | 188.53 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 864 | 188.53 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 913 | 188.53 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 20 |
| 924 | 188.54 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 12 |
| 928 | 188.54 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 18 |
| 973 | 188.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 977 | 188.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 19 |
| 990 | 188.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 22 |
| 996 | 188.70 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 999 | 188.70 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 16 |