Os04g0387500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0387500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.87 | 0.308 | 13.9 | -0.417 | 0.223 | -0.997 | 0.127 | -1.01 | 0.162 | 17.1 | 18.7 | 5331 | -- | -- |
| 43.75 | 0.308 | 14 | -0.522 | 0.211 | -0.748 | 0.132 | -- | 0.15 | 17.1 | 18.48 | 9432 | -- | -- |
| 42.77 | 0.305 | 13.9 | -0.424 | 0.228 | -1.04 | -- | -1.08 | 0.166 | 17.2 | 18.52 | 5458 | -- | -- |
| 43.77 | 0.308 | 14 | -0.524 | 0.219 | -0.758 | -- | -- | 0.148 | 17.1 | 18.4 | 9434 | -- | -- |
| 45.46 | 0.314 | 13.9 | -0.435 | -- | -1.07 | -- | -1.12 | 0.163 | -- | 18.49 | 5622 | -- | -- |
| 50.75 | 0.334 | 13.9 | -0.0342 | 0.207 | -- | 0.138 | -- | 0.31 | 17.4 | -- | -- | -- | -- |
| 50.8 | 0.334 | 13.9 | -0.0345 | 0.208 | -- | -- | -- | 0.311 | 17.4 | -- | -- | -- | -- |
| 46.19 | 0.317 | 14 | -0.536 | -- | -0.768 | -- | -- | 0.144 | -- | 18.4 | 9351 | -- | -- |
| 46.56 | 0.318 | 13.9 | -- | 0.219 | -0.635 | -- | -- | 0.259 | 16.4 | 18.23 | 1257 | -- | -- |
| 53.06 | 0.34 | 13.9 | -0.0416 | -- | -- | -- | -- | 0.306 | -- | -- | -- | -- | -- |
| 50.83 | 0.334 | 13.9 | -- | 0.209 | -- | -- | -- | 0.315 | 17.4 | -- | -- | -- | -- |
| 48.6 | 0.325 | 13.9 | -- | -- | -0.315 | -- | -- | 0.245 | -- | 21.7 | 2054 | -- | -- |
| 53.1 | 0.34 | 13.9 | -- | -- | -- | -- | -- | 0.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.98 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 2 | 36.10 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 4 | 36.22 | radiation | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 6 | 36.27 | radiation | 20 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 11 | 36.32 | radiation | 10 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 12 | 36.33 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 16 |
| 35 | 36.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 158 | 36.58 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 224 | 36.67 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 226 | 36.68 | radiation | 10 | 43200 | < th | dose independent | sin | 8 | NA |
| 259 | 36.72 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 301 | 36.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 318 | 36.81 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 347 | 36.82 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 9 |
| 351 | 36.83 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 373 | 36.85 | radiation | 1 | 43200 | > th | dose dependent | sin | 10 | NA |
| 374 | 36.85 | humidity | 90 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 377 | 36.86 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 379 | 36.87 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 419 | 36.90 | radiation | 30 | 43200 | < th | dose dependent | sin | 10 | NA |
| 454 | 36.94 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 455 | 36.95 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 490 | 36.97 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 527 | 36.98 | wind | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 539 | 37.00 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 13 |
| 553 | 37.01 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 560 | 37.02 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 576 | 37.03 | radiation | 40 | 43200 | > th | dose dependent | sin | 3 | NA |
| 580 | 37.03 | radiation | 40 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 587 | 37.03 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 13 |
| 605 | 37.04 | radiation | 40 | 43200 | > th | dose dependent | sin | 1 | NA |
| 612 | 37.05 | radiation | 30 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 646 | 37.06 | radiation | 40 | 43200 | > th | dose dependent | no | NA | NA |
| 649 | 37.06 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 832 | 37.07 | radiation | 30 | 43200 | < th | dose independent | sin | 0 | NA |
| 878 | 37.08 | radiation | 30 | 43200 | < th | dose independent | no | NA | NA |