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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0387300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MADS30.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.9 (0.0726) R2 : 0.625
β1 : -0.641 (0.254) R2dD : 0.00624 R2D : -0.0558
β2 : 0.725 (0.157) R2dC : 0.0173 R2C : -0.0724
β3 : -1.84 (0.316) R2dE : 0.0486 R2E : -0.0799
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.97 (1.44) R2dD*E : 0.0585 R2D*E : -0.106
γ1 : 3.33 (0.143) R2dN8 : 0.612 R2N8 : 0.548
σ : 1.23
deviance : 699.26
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_____
C
peak time of C : 12.7
E
wheather : wind
threshold : 9
memory length : 4321
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.4
open length of G : 3.12

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
699.48 1.24 4.9 -0.704 0.73 -1.87 0.368 -8.9 3.31 12.8 9 4321 10.3 3.01
738.62 1.27 4.86 -0.646 0.402 -1.36 0.131 -- 3.2 12.6 6.292 5513 10.5 3.13
699.26 1.23 4.9 -0.641 0.725 -1.84 -- -8.97 3.33 12.7 9 4321 10.4 3.12
733.36 1.26 4.84 -0.512 0.415 -1.53 -- -- 3.21 14 6.3 5479 10.7 3.2
724.39 1.25 4.92 -0.648 -- -1.92 -- -8.65 3.31 -- 8.999 4317 10.4 3.15
764.22 1.3 4.71 -1.05 0.738 -- -0.133 -- 3.48 12.1 -- -- -- --
764.28 1.29 4.71 -1.06 0.739 -- -- -- 3.48 12.2 -- -- -- --
740.76 1.27 4.83 -0.564 -- -1.71 -- -- 3.21 -- 6.246 5489 10.7 3.18
738.62 1.27 4.82 -- 0.298 -1.83 -- -- 3.22 15 6.205 5475 10.7 3.16
798.61 1.32 4.72 -1.08 -- -- -- -- 3.47 -- -- -- -- --
793.65 1.32 4.68 -- 0.753 -- -- -- 3.6 12.3 -- -- -- --
744.34 1.27 4.82 -- -- -1.97 -- -- 3.16 -- 6.212 5485 10.8 3.13
829.35 1.34 4.69 -- -- -- -- -- 3.59 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 693.85 wind 3.0 43200 < th dose dependent rect. 1 1
2 695.05 wind 5.0 14400 < th dose dependent rect. 23 7
3 695.16 wind 3.0 14400 < th dose independent rect. 1 5
5 695.66 wind 9.0 14400 < th dose dependent rect. 23 14
9 695.82 humidity 90.0 14400 < th dose dependent rect. 3 1
10 695.82 wind 7.0 14400 < th dose dependent rect. 23 12
17 696.04 wind 1.0 14400 > th dose dependent rect. 23 14
19 696.07 wind 1.0 14400 > th dose dependent rect. 23 12
37 696.36 wind 9.0 14400 < th dose dependent sin 7 NA
44 696.40 wind 1.0 14400 > th dose dependent sin 7 NA
48 696.43 wind 3.0 14400 > th dose independent rect. 24 11
60 696.58 wind 3.0 14400 < th dose independent rect. 24 11
61 696.60 wind 3.0 14400 > th dose independent rect. 24 6
89 696.96 wind 3.0 14400 > th dose independent rect. 24 13
100 697.08 wind 3.0 14400 < th dose independent rect. 24 13
127 697.32 wind 3.0 14400 < th dose independent rect. 20 10
145 697.48 wind 3.0 14400 < th dose dependent rect. 4 2
175 697.74 wind 3.0 14400 < th dose independent rect. 4 2
179 697.76 wind 3.0 14400 < th dose independent sin 8 NA
193 697.81 wind 3.0 14400 > th dose independent rect. 20 10
198 697.84 wind 3.0 14400 > th dose independent sin 8 NA
210 697.91 wind 1.0 14400 > th dose dependent rect. 23 7
215 697.93 wind 1.0 14400 > th dose dependent rect. 20 11
276 698.36 wind 3.0 14400 > th dose independent rect. 4 2
363 698.87 wind 3.0 43200 < th dose independent rect. 1 1
527 700.24 wind 1.0 14400 > th dose dependent rect. 5 1
613 700.92 wind 1.0 14400 > th dose dependent rect. 1 1
719 702.31 wind 1.0 43200 < th dose dependent rect. 12 1
827 703.49 wind 9.0 4320 < th dose independent rect. 10 3
857 703.93 precipitation 0.1 1440 < th dose independent rect. 5 2
858 703.93 precipitation 0.1 1440 < th dose dependent rect. 5 2
865 704.04 humidity 80.0 14400 > th dose independent rect. 6 1
885 704.27 precipitation 0.1 1440 > th dose dependent rect. 5 2
904 704.55 wind 9.0 4320 < th dose independent rect. 8 5
918 704.72 wind 9.0 4320 > th dose independent rect. 10 3
955 705.13 wind 7.0 4320 > th dose dependent rect. 10 3
968 705.23 temperature 20.0 720 > th dose independent rect. 3 15
990 705.59 temperature 20.0 720 > th dose independent rect. 22 19