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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0386700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0348) R2 : 0.108
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.646 (0.0883) R2dC : 0.105 R2C : 0.103
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.105 (0.0732) R2dN8 : 0.00521 R2N8 : 0.00281
σ : 0.656
deviance : 196.52
__
_____
C
peak time of C : 20.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
155.43 0.586 2.99 -0.694 0.633 0.0872 -1.75 4.02 0.146 20.3 6.286 4113 -- --
165.66 0.599 3.1 -0.62 0.602 -0.386 -1.89 -- -0.0779 20.3 6.902 5373 -- --
162.29 0.593 3 -0.688 0.652 0.237 -- 4.68 0.131 20.3 5.909 3686 -- --
175.49 0.617 3.1 -0.593 0.61 -0.433 -- -- -0.037 20.2 7 5304 -- --
183.91 0.632 2.97 -0.608 -- 0.123 -- 4.86 0.167 -- 6.218 3770 -- --
168.78 0.609 3.09 -0.859 0.632 -- -1.85 -- 0.015 20.6 -- -- -- --
179.75 0.628 3.09 -0.798 0.642 -- -- -- 0.0162 20.3 -- -- -- --
195.17 0.651 3.08 -0.536 -- -0.563 -- -- -0.0129 -- 6.923 5139 -- --
183.72 0.631 3.07 -- 0.591 -0.634 -- -- 0.0474 20.2 6.508 5392 -- --
202.61 0.665 3.08 -0.802 -- -- -- -- 0.00932 -- -- -- -- --
196.52 0.656 3.07 -- 0.646 -- -- -- 0.105 20.2 -- -- -- --
201.34 0.661 3.08 -- -- -0.877 -- -- -0.00958 -- 6.598 5168 -- --
219.57 0.692 3.06 -- -- -- -- -- 0.0983 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.67 temperature 20.0 270 > th dose independent rect. 15 12
2 143.12 temperature 20.0 270 > th dose independent rect. 15 5
5 143.88 humidity 90.0 270 < th dose independent rect. 16 3
6 144.15 temperature 20.0 270 > th dose independent rect. 15 16
11 144.41 temperature 20.0 90 > th dose independent rect. 17 11
13 144.60 temperature 20.0 270 > th dose independent rect. 16 3
24 145.59 humidity 50.0 270 > th dose independent rect. 19 22
30 145.84 wind 1.0 270 > th dose dependent rect. 16 3
34 145.93 wind 3.0 270 > th dose independent rect. 16 3
36 146.01 wind 7.0 4320 < th dose independent rect. 17 2
39 146.08 wind 7.0 4320 > th dose independent rect. 17 2
56 146.52 wind 5.0 270 > th dose independent rect. 17 1
59 146.66 atmosphere 1005.0 270 < th dose independent rect. 16 5
62 146.70 radiation 40.0 14400 > th dose independent rect. 15 1
78 146.74 temperature 20.0 30 > th dose independent rect. 17 5
81 146.79 atmosphere 995.0 43200 > th dose independent sin 18 NA
84 146.94 atmosphere 995.0 43200 < th dose independent rect. 12 13
85 146.95 wind 1.0 270 > th dose dependent rect. 17 1
87 147.02 atmosphere 995.0 43200 > th dose independent rect. 11 14
88 147.03 temperature 20.0 10 > th dose independent rect. 18 2
89 147.04 wind 9.0 4320 > th dose dependent rect. 18 1
90 147.06 atmosphere 995.0 43200 < th dose independent sin 18 NA
94 147.20 atmosphere 995.0 43200 > th dose independent rect. 12 12
96 147.22 atmosphere 995.0 43200 < th dose independent rect. 13 11
100 147.26 atmosphere 995.0 43200 > th dose independent rect. 10 16
103 147.30 atmosphere 995.0 43200 < th dose independent rect. 11 15
105 147.37 atmosphere 995.0 43200 > th dose independent rect. 9 18
115 147.57 atmosphere 995.0 43200 > th dose independent rect. 8 20
118 147.58 radiation 40.0 14400 > th dose dependent rect. 15 1
137 147.62 atmosphere 995.0 43200 > th dose independent rect. 23 22
140 147.63 wind 1.0 270 > th dose dependent rect. 15 5
147 147.67 atmosphere 995.0 43200 < th dose independent rect. 9 18
154 147.74 atmosphere 995.0 43200 > th dose independent rect. 6 22
168 147.83 humidity 50.0 270 > th dose independent rect. 11 13
172 147.85 atmosphere 995.0 43200 < th dose independent rect. 8 20
190 147.95 atmosphere 995.0 43200 < th dose independent rect. 23 23
194 147.98 atmosphere 995.0 43200 < th dose independent rect. 23 20
206 148.03 atmosphere 995.0 43200 < th dose independent rect. 7 22
221 148.13 temperature 20.0 270 > th dose independent sin 15 NA
259 148.33 humidity 60.0 14400 > th dose independent rect. 20 7
263 148.37 atmosphere 995.0 43200 < th dose dependent rect. 14 9
264 148.38 atmosphere 995.0 43200 < th dose independent no NA NA
273 148.45 atmosphere 1010.0 90 < th dose dependent rect. 18 1
276 148.51 atmosphere 995.0 43200 > th dose independent no NA NA
284 148.52 atmosphere 995.0 43200 > th dose independent rect. 20 23
305 148.67 humidity 90.0 90 < th dose dependent rect. 17 3
314 148.73 atmosphere 995.0 43200 < th dose dependent rect. 13 12
332 148.88 atmosphere 995.0 43200 < th dose dependent rect. 12 22
335 148.89 temperature 20.0 270 < th dose independent rect. 12 14
339 148.90 wind 5.0 4320 > th dose dependent rect. 17 3
354 148.97 atmosphere 995.0 43200 < th dose independent rect. 11 23
377 149.09 atmosphere 995.0 43200 < th dose dependent rect. 17 22
389 149.13 atmosphere 995.0 43200 < th dose dependent rect. 22 17
401 149.18 atmosphere 995.0 43200 < th dose dependent sin 17 NA
425 149.24 atmosphere 995.0 43200 < th dose dependent sin 6 NA
429 149.25 atmosphere 995.0 43200 < th dose independent rect. 3 11
433 149.26 atmosphere 995.0 43200 < th dose dependent rect. 9 23
434 149.27 atmosphere 995.0 43200 > th dose independent rect. 3 11
438 149.27 atmosphere 995.0 43200 < th dose dependent rect. 9 21
453 149.29 atmosphere 995.0 43200 < th dose dependent no NA NA
454 149.29 temperature 10.0 270 > th dose dependent rect. 15 5
461 149.30 atmosphere 995.0 43200 < th dose independent rect. 5 4
475 149.32 atmosphere 995.0 43200 > th dose independent rect. 5 5
476 149.32 temperature 10.0 270 > th dose dependent rect. 16 3
477 149.32 atmosphere 995.0 43200 < th dose dependent rect. 2 8
480 149.33 atmosphere 1010.0 10 < th dose dependent rect. 18 4
491 149.36 atmosphere 995.0 43200 > th dose independent rect. 6 2
495 149.36 atmosphere 995.0 43200 < th dose dependent rect. 12 14
496 149.37 atmosphere 995.0 43200 < th dose dependent rect. 3 6
501 149.39 atmosphere 995.0 43200 < th dose independent rect. 4 7
506 149.39 atmosphere 995.0 43200 > th dose independent rect. 12 23
520 149.43 atmosphere 995.0 43200 < th dose dependent rect. 1 10
522 149.44 atmosphere 995.0 43200 > th dose independent sin 4 NA
532 149.47 atmosphere 995.0 43200 > th dose independent rect. 4 8
546 149.51 atmosphere 995.0 43200 < th dose independent sin 5 NA
553 149.52 atmosphere 995.0 43200 > th dose independent rect. 14 23
554 149.52 atmosphere 1010.0 90 < th dose dependent rect. 17 6
582 149.59 temperature 20.0 270 < th dose independent sin 16 NA
600 149.65 atmosphere 1015.0 270 < th dose dependent rect. 16 3
618 149.71 atmosphere 995.0 43200 < th dose dependent rect. 5 3
652 149.81 humidity 60.0 14400 > th dose independent rect. 20 12
658 149.83 wind 7.0 4320 < th dose independent rect. 13 12
665 149.85 radiation 10.0 14400 > th dose dependent rect. 5 1
691 149.89 temperature 10.0 10 > th dose dependent rect. 18 2
701 149.91 atmosphere 1000.0 270 > th dose independent rect. 16 3
735 150.00 humidity 90.0 14400 < th dose dependent rect. 21 2
748 150.03 wind 7.0 4320 > th dose independent rect. 13 12
753 150.04 atmosphere 1015.0 10 < th dose dependent rect. 18 2
761 150.08 humidity 90.0 270 < th dose dependent rect. 17 1
822 150.28 atmosphere 1005.0 43200 < th dose dependent rect. 9 1
884 150.51 radiation 1.0 720 < th dose dependent rect. 10 6
904 150.57 humidity 50.0 14400 > th dose dependent rect. 21 1
938 150.68 humidity 60.0 14400 < th dose independent rect. 14 2
944 150.70 precipitation 0.1 270 < th dose independent rect. 16 3
945 150.70 precipitation 0.1 270 < th dose dependent rect. 16 3
956 150.72 temperature 10.0 270 > th dose dependent rect. 15 18
966 150.74 humidity 60.0 14400 > th dose independent rect. 14 2
980 150.77 temperature 30.0 270 < th dose independent rect. 19 22
989 150.80 radiation 20.0 14400 > th dose dependent rect. 16 2