FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0386300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0186) R2 : 0.000832
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0241 (0.0391) R2dN8 : 0.00107 R2N8 : 0.000832
σ : 0.35
deviance : 56.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.42 0.347 3.07 0.122 0.151 -0.0694 0.077 -0.441 0.0178 3.64 90.04 80 -- --
54.96 0.348 3.07 0.0823 0.149 -0.0866 -0.242 -- 0.00784 3.42 90.04 80 -- --
54.39 0.343 3.06 0.115 0.14 -0.0737 -- -0.417 0.0173 3.47 91.01 96 -- --
54.94 0.345 3.07 0.109 0.157 -0.134 -- -- 0.00742 4.97 93.76 219 -- --
55.2 0.346 3.06 0.11 -- 0.0126 -- -0.419 0.0428 -- 90 131 -- --
55.35 0.349 3.06 0.0634 0.0855 -- -0.3 -- 0.0282 3.29 -- -- -- --
55.61 0.349 3.06 0.0692 0.0884 -- -- -- 0.0298 4.17 -- -- -- --
55.86 0.348 3.06 0.072 -- -0.084 -- -- 0.0174 -- 94 148 -- --
55.1 0.346 3.07 -- 0.162 -0.148 -- -- -0.00706 4.46 93.86 219 -- --
56.04 0.35 3.06 0.0728 -- -- -- -- 0.0322 -- -- -- -- --
55.74 0.349 3.06 -- 0.0898 -- -- -- 0.0221 4.15 -- -- -- --
56.02 0.349 3.07 -- -- -0.072 -- -- 0.0146 -- 94.76 158 -- --
56.18 0.35 3.06 -- -- -- -- -- 0.0241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.94 wind 9.0 1440 < th dose independent rect. 23 1
2 44.94 temperature 10.0 1440 > th dose independent rect. 23 1
5 44.94 temperature 30.0 1440 < th dose independent rect. 23 1
9 44.94 humidity 50.0 1440 > th dose independent rect. 23 1
19 44.94 atmosphere 995.0 1440 > th dose independent rect. 23 1
20 44.94 radiation 1.0 1440 < th dose independent rect. 23 1
40 44.94 temperature 10.0 1440 > th dose independent rect. 24 23
43 44.94 radiation 1.0 1440 < th dose dependent rect. 23 1
48 45.02 humidity 90.0 30 < th dose independent rect. 22 1
49 45.06 temperature 25.0 30 > th dose independent rect. 22 1
50 45.10 temperature 25.0 30 > th dose dependent rect. 22 1
51 45.10 atmosphere 1005.0 30 > th dose dependent rect. 22 1
53 45.16 atmosphere 1005.0 30 > th dose independent rect. 22 1
57 45.22 humidity 90.0 30 < th dose dependent rect. 22 1
63 45.35 precipitation 0.1 30 < th dose independent rect. 22 1
64 45.35 precipitation 0.1 30 < th dose dependent rect. 22 1
65 45.37 wind 1.0 30 > th dose independent rect. 22 1
66 45.38 wind 3.0 30 < th dose independent rect. 22 1
67 45.41 wind 7.0 30 < th dose independent rect. 22 1
69 45.41 temperature 10.0 30 > th dose independent rect. 22 1
71 45.41 temperature 30.0 30 < th dose independent rect. 22 1
72 45.41 humidity 50.0 30 > th dose independent rect. 22 1
76 45.41 atmosphere 1010.0 30 < th dose independent rect. 22 1
78 45.41 radiation 1.0 30 < th dose independent rect. 22 1
83 45.41 temperature 10.0 30 > th dose independent rect. 23 23
84 45.41 radiation 1.0 30 < th dose dependent rect. 22 1
90 45.43 wind 9.0 30 < th dose dependent rect. 22 1
94 45.55 humidity 50.0 30 > th dose dependent rect. 22 1
96 45.64 wind 1.0 30 > th dose dependent rect. 22 1
101 46.00 atmosphere 1015.0 30 < th dose dependent rect. 22 1
104 46.27 temperature 30.0 30 < th dose dependent rect. 22 1
121 47.11 wind 9.0 30 < th dose independent rect. 23 23
174 51.54 atmosphere 995.0 30 > th dose independent rect. 23 23
220 52.46 precipitation 0.1 30 < th dose independent rect. 23 23
221 52.46 precipitation 0.1 30 < th dose dependent rect. 23 23
231 52.73 radiation 20.0 10 < th dose dependent rect. 23 23
240 52.98 atmosphere 1015.0 30 < th dose independent rect. 22 14
242 53.03 atmosphere 995.0 30 > th dose independent rect. 12 10
248 53.06 wind 1.0 10 > th dose independent rect. 12 10
250 53.06 radiation 10.0 10 < th dose independent rect. 23 23
254 53.10 precipitation 0.1 30 < th dose independent rect. 22 14
256 53.10 precipitation 0.1 30 < th dose dependent rect. 22 14
257 53.11 atmosphere 1010.0 10 < th dose independent rect. 12 10
260 53.11 temperature 10.0 10 > th dose dependent rect. 24 22
265 53.14 wind 9.0 10 < th dose independent rect. 12 10
268 53.15 humidity 60.0 1440 > th dose independent rect. 18 1
275 53.17 humidity 50.0 1440 > th dose independent rect. 16 4
276 53.17 humidity 60.0 1440 > th dose independent rect. 18 6
280 53.17 temperature 10.0 30 > th dose independent rect. 12 10
282 53.17 temperature 10.0 1440 > th dose independent rect. 13 10
287 53.17 temperature 10.0 30 > th dose independent rect. 22 14
288 53.17 temperature 10.0 1440 > th dose independent rect. 23 14
291 53.17 atmosphere 995.0 30 > th dose independent rect. 22 14
292 53.17 atmosphere 995.0 1440 > th dose independent rect. 23 14
294 53.18 humidity 60.0 1440 < th dose independent rect. 18 1
307 53.18 humidity 60.0 1440 < th dose dependent rect. 18 1
311 53.19 humidity 50.0 1440 < th dose independent rect. 16 2
331 53.19 humidity 60.0 1440 > th dose independent rect. 18 12
336 53.19 humidity 60.0 1440 > th dose independent rect. 18 14
360 53.20 radiation 20.0 10 < th dose independent rect. 24 10
361 53.20 humidity 50.0 1440 > th dose independent rect. 16 11
364 53.20 humidity 50.0 1440 > th dose independent rect. 16 17
395 53.21 precipitation 0.1 10 < th dose independent rect. 12 10
415 53.21 precipitation 0.1 10 < th dose dependent rect. 12 10
569 53.28 atmosphere 1000.0 10 > th dose independent rect. 24 11
579 53.30 atmosphere 1015.0 30 < th dose independent rect. 23 23
584 53.31 temperature 15.0 270 > th dose independent rect. 23 20
586 53.31 radiation 40.0 10 < th dose dependent rect. 24 11
654 53.35 temperature 25.0 90 > th dose independent rect. 4 1
676 53.36 wind 9.0 30 < th dose independent rect. 22 14
677 53.36 radiation 40.0 270 < th dose independent rect. 19 17
678 53.36 wind 7.0 30 < th dose independent rect. 3 19
711 53.37 temperature 10.0 30 > th dose dependent rect. 3 19
736 53.38 humidity 50.0 10 > th dose dependent rect. 24 11
739 53.39 atmosphere 1005.0 270 > th dose independent rect. 19 4
742 53.40 radiation 40.0 90 < th dose independent rect. 21 15
747 53.41 humidity 50.0 10 > th dose independent rect. 22 14
749 53.41 temperature 10.0 270 > th dose dependent rect. 23 20
750 53.42 wind 5.0 270 < th dose independent rect. 19 4
772 53.44 atmosphere 1015.0 270 < th dose independent rect. 19 4
787 53.46 temperature 10.0 30 > th dose dependent rect. 12 10
788 53.47 atmosphere 1015.0 10 < th dose independent rect. 11 13
812 53.48 temperature 15.0 720 > th dose independent rect. 3 8
813 53.48 humidity 50.0 30 > th dose independent rect. 12 10
820 53.49 atmosphere 1000.0 90 > th dose independent rect. 24 9
867 53.51 humidity 70.0 10 > th dose independent rect. 24 10
872 53.51 wind 9.0 30 < th dose dependent rect. 24 22
888 53.52 temperature 25.0 90 > th dose dependent rect. 4 1
895 53.53 wind 1.0 270 > th dose independent rect. 19 4
939 53.54 humidity 90.0 10 < th dose independent rect. 22 18
941 53.54 wind 9.0 270 < th dose dependent rect. 19 4
943 53.55 precipitation 0.1 1440 < th dose independent rect. 23 1
944 53.55 atmosphere 1015.0 30 < th dose independent rect. 22 5
945 53.55 temperature 15.0 720 > th dose independent rect. 15 8
948 53.55 atmosphere 1015.0 270 < th dose independent rect. 8 15
952 53.55 precipitation 0.1 1440 < th dose dependent rect. 23 1