FiT-DB / Search/ Help/ Sample detail

Os04g0385900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.0264) R2 : 0.336
β1 : 1.31 (0.0966) R2dD : 0.278 R2D : 0.168
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.521 (0.0563) R2dN8 : 0.167 R2N8 : 0.0573
σ : 0.495
deviance : 112.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.84 0.453 12.7 0.873 0.133 -0.77 1.33 1.4 0.305 17 24.8 257 -- --
94.13 0.452 12.7 1.08 0.159 -1.06 0.998 -- 0.359 17.2 23 341 -- --
96.42 0.457 12.7 1.01 0.171 -0.864 -- 0.747 0.343 17.4 23.63 328 -- --
96.42 0.457 12.7 1.08 0.161 -1.07 -- -- 0.379 17.5 22.9 336 -- --
97.64 0.46 12.7 1.01 -- -1.02 -- 0.414 0.357 -- 23.24 326 -- --
106.93 0.485 12.7 1.32 0.24 -- 0.919 -- 0.523 17.2 -- -- -- --
109.05 0.489 12.7 1.32 0.246 -- -- -- 0.527 17.2 -- -- -- --
97.77 0.461 12.7 1.06 -- -1.12 -- -- 0.368 -- 22.94 332 -- --
97.93 0.461 12.8 -- 0.243 -1.33 -- -- 0.154 17.1 17.81 47281 -- --
112.22 0.495 12.7 1.31 -- -- -- -- 0.521 -- -- -- -- --
154.92 0.582 12.7 -- 0.224 -- -- -- 0.38 17.5 -- -- -- --
101.22 0.469 12.7 -- -- -1.31 -- -- 0.155 -- 17.7 47520 -- --
157.53 0.586 12.7 -- -- -- -- -- 0.376 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.27 temperature 15.0 10 > th dose dependent sin 8 NA
5 86.01 temperature 20.0 90 > th dose independent rect. 18 17
6 86.03 humidity 90.0 14400 > th dose dependent rect. 5 1
9 86.38 temperature 20.0 10 > th dose independent rect. 19 15
12 86.49 temperature 15.0 270 > th dose dependent rect. 17 16
16 86.54 wind 1.0 14400 < th dose dependent rect. 23 3
23 87.08 temperature 30.0 10 < th dose dependent sin 8 NA
30 87.22 humidity 90.0 14400 > th dose dependent rect. 4 3
37 87.43 atmosphere 995.0 43200 > th dose independent rect. 21 16
46 87.60 atmosphere 995.0 43200 > th dose independent sin 7 NA
49 87.63 atmosphere 995.0 43200 < th dose independent sin 7 NA
50 87.65 atmosphere 995.0 43200 < th dose independent rect. 18 19
63 87.88 atmosphere 995.0 43200 < th dose independent rect. 21 16
89 88.09 atmosphere 995.0 43200 < th dose dependent sin 10 NA
102 88.20 atmosphere 995.0 43200 < th dose dependent rect. 16 18
106 88.24 atmosphere 995.0 43200 < th dose dependent rect. 17 16
110 88.27 atmosphere 995.0 43200 > th dose independent rect. 5 3
115 88.28 atmosphere 995.0 43200 > th dose independent rect. 2 8
118 88.31 atmosphere 995.0 43200 < th dose dependent rect. 1 8
119 88.32 atmosphere 995.0 43200 < th dose independent rect. 3 6
122 88.33 atmosphere 995.0 43200 < th dose dependent rect. 23 10
123 88.34 radiation 20.0 43200 > th dose independent rect. 9 1
124 88.34 atmosphere 995.0 43200 < th dose independent rect. 2 8
130 88.36 atmosphere 995.0 43200 < th dose dependent rect. 13 20
131 88.37 atmosphere 995.0 43200 > th dose independent rect. 3 6
140 88.40 atmosphere 995.0 43200 < th dose dependent rect. 4 4
145 88.42 atmosphere 995.0 43200 < th dose dependent rect. 11 19
157 88.47 humidity 90.0 14400 > th dose dependent rect. 2 13
167 88.51 humidity 90.0 14400 > th dose dependent rect. 3 6
172 88.54 humidity 90.0 14400 > th dose dependent rect. 2 9
183 88.64 atmosphere 995.0 43200 < th dose independent rect. 5 3
249 89.04 humidity 90.0 14400 > th dose dependent sin 5 NA
250 89.04 temperature 30.0 270 < th dose dependent rect. 21 8
298 89.25 radiation 40.0 43200 > th dose independent rect. 13 1
337 89.43 humidity 90.0 14400 > th dose dependent rect. 12 18
338 89.45 temperature 20.0 10 > th dose independent sin 9 NA
343 89.47 wind 9.0 43200 > th dose independent rect. 10 3
346 89.48 wind 9.0 43200 < th dose independent rect. 10 3
348 89.49 temperature 30.0 10 < th dose dependent rect. 23 7
352 89.53 wind 7.0 43200 < th dose independent rect. 21 2
355 89.53 radiation 30.0 43200 < th dose dependent rect. 9 1
358 89.54 wind 7.0 43200 > th dose independent rect. 21 2
362 89.55 wind 3.0 43200 < th dose dependent rect. 8 1
450 89.86 radiation 20.0 43200 > th dose independent rect. 13 1
463 89.89 temperature 25.0 270 < th dose dependent rect. 21 12
464 89.89 temperature 25.0 90 < th dose dependent rect. 23 12
489 89.96 wind 9.0 43200 < th dose independent rect. 9 5
492 89.97 wind 9.0 43200 > th dose dependent rect. 1 1
496 89.98 radiation 20.0 43200 < th dose independent rect. 10 1
508 90.01 precipitation 0.1 43200 > th dose independent rect. 7 6
510 90.01 precipitation 0.1 43200 > th dose dependent rect. 7 6
515 90.02 wind 7.0 43200 > th dose dependent rect. 10 3
516 90.02 radiation 10.0 4320 < th dose dependent rect. 22 7
548 90.09 radiation 20.0 43200 > th dose independent rect. 8 6
560 90.10 precipitation 0.1 43200 > th dose independent rect. 10 3
563 90.10 precipitation 0.1 43200 > th dose dependent rect. 10 3
566 90.11 wind 1.0 14400 < th dose independent rect. 24 2
567 90.11 wind 7.0 43200 > th dose dependent rect. 21 2
569 90.11 atmosphere 995.0 43200 < th dose dependent rect. 21 19
573 90.12 radiation 20.0 43200 < th dose independent rect. 13 1
575 90.12 radiation 10.0 4320 < th dose dependent rect. 24 5
581 90.14 humidity 70.0 43200 > th dose independent rect. 18 1
606 90.16 wind 9.0 43200 < th dose independent rect. 8 7
609 90.16 wind 7.0 43200 > th dose dependent rect. 9 5
617 90.17 wind 9.0 43200 > th dose independent rect. 9 6
631 90.17 radiation 30.0 43200 < th dose dependent rect. 13 1
647 90.19 humidity 90.0 14400 > th dose dependent no NA NA
662 90.21 precipitation 0.1 43200 < th dose independent rect. 7 6
664 90.21 precipitation 0.1 43200 < th dose dependent rect. 7 6
696 90.27 precipitation 0.1 43200 < th dose independent rect. 11 2
702 90.27 precipitation 0.1 43200 < th dose dependent rect. 11 2
708 90.28 atmosphere 995.0 43200 < th dose dependent no NA NA
711 90.28 humidity 90.0 14400 > th dose dependent rect. 2 23
743 90.31 wind 9.0 43200 > th dose dependent rect. 16 1
758 90.33 radiation 20.0 43200 > th dose independent sin 7 NA
763 90.33 radiation 30.0 43200 < th dose dependent rect. 9 5
794 90.39 humidity 90.0 14400 > th dose independent rect. 23 1
795 90.39 wind 9.0 43200 < th dose independent rect. 16 2
803 90.40 humidity 90.0 14400 > th dose dependent sin 13 NA
851 90.46 atmosphere 995.0 43200 < th dose dependent sin 16 NA
878 90.53 radiation 10.0 720 < th dose independent sin 14 NA
938 90.60 wind 9.0 43200 < th dose independent rect. 21 5
950 90.62 atmosphere 995.0 43200 < th dose dependent rect. 1 23
952 90.63 wind 9.0 43200 > th dose independent rect. 1 1
953 90.63 humidity 90.0 14400 > th dose independent rect. 2 7
979 90.65 temperature 20.0 90 > th dose independent rect. 18 9
993 90.68 radiation 1.0 43200 > th dose dependent rect. 13 1