Os04g0384800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0384800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 448.26 | 0.995 | 6.33 | -4.16 | 0.747 | 4.31 | -3.17 | 8.45 | -0.691 | 23.3 | 21.34 | 5902 | -- | -- |
| 495.06 | 1.04 | 6.16 | -4.58 | 0.686 | 0.486 | -3.2 | -- | -0.895 | 23.2 | 21.34 | 5902 | -- | -- |
| 491.36 | 1.03 | 6.34 | -4.01 | 0.765 | 4.47 | -- | 8.73 | -0.681 | 23.2 | 21.21 | 5899 | -- | -- |
| 515.06 | 1.06 | 6.12 | -4.07 | 0.738 | 1.11 | -- | -- | -0.707 | 23.7 | 31.22 | 4239 | -- | -- |
| 527.53 | 1.07 | 6.32 | -3.94 | -- | 4.65 | -- | 9 | -0.667 | -- | 21.03 | 5942 | -- | -- |
| 497.17 | 1.05 | 6.17 | -4.67 | 0.73 | -- | -3.23 | -- | -0.938 | 23.2 | -- | -- | -- | -- |
| 541.77 | 1.09 | 6.17 | -4.53 | 0.747 | -- | -- | -- | -0.925 | 23.1 | -- | -- | -- | -- |
| 538.02 | 1.09 | 6.09 | -4.21 | -- | 1.42 | -- | -- | -0.683 | -- | 31.22 | 4239 | -- | -- |
| 577.63 | 1.12 | 5.83 | -- | 0.802 | 3.66 | -- | -- | 0.58 | 23.1 | 24.5 | 47520 | -- | -- |
| 576.57 | 1.12 | 6.15 | -4.52 | -- | -- | -- | -- | -0.919 | -- | -- | -- | -- | -- |
| 1083.49 | 1.54 | 6.05 | -- | 0.71 | -- | -- | -- | -0.42 | 22.7 | -- | -- | -- | -- |
| 617.83 | 1.16 | 5.81 | -- | -- | 3.62 | -- | -- | 0.561 | -- | 24.2 | 47520 | -- | -- |
| 1114.59 | 1.56 | 6.03 | -- | -- | -- | -- | -- | -0.418 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 442.33 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 21 |
| 3 | 444.50 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 5 | 445.60 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 27 | 448.83 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 22 | 18 |
| 40 | 450.03 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 5 |
| 47 | 450.55 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 5 |
| 51 | 450.74 | wind | 9.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 52 | 450.75 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 56 | 451.07 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 60 | 451.29 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 2 |
| 68 | 451.52 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 71 | 451.63 | wind | 1.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 76 | 451.84 | wind | 1.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 80 | 451.95 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 81 | 452.05 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 9 | 7 |
| 91 | 452.20 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 92 | 452.21 | wind | 1.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 98 | 452.24 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 105 | 452.42 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 128 | 452.66 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 2 | 10 |
| 188 | 452.91 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 20 | 7 |
| 213 | 453.03 | atmosphere | 1010.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 219 | 453.06 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 231 | 453.08 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 239 | 453.09 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 1 | 15 |
| 254 | 453.18 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 257 | 453.18 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 262 | 453.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 263 | 453.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 271 | 453.21 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 277 | 453.23 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 280 | 453.23 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 5 | 11 |
| 287 | 453.25 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 310 | 453.33 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 12 | 17 |
| 324 | 453.37 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 327 | 453.37 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 378 | 453.50 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 389 | 453.54 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 14 | NA |
| 436 | 453.66 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 444 | 453.68 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 445 | 453.68 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 481 | 453.76 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 9 |
| 529 | 453.88 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 566 | 453.97 | atmosphere | 1010.0 | 14400 | > th | dose dependent | no | NA | NA |
| 586 | 454.01 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 592 | 454.02 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 605 | 454.04 | wind | 9.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 613 | 454.05 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 732 | 454.29 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 829 | 454.48 | temperature | 20.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 830 | 454.48 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 865 | 454.53 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 873 | 454.55 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 893 | 454.59 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 929 | 454.70 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 996 | 454.84 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 20 | 18 |