Os04g0384100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0384100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 279.2 | 0.785 | 4.35 | -2.7 | 0.296 | -0.583 | 0.95 | 3.46 | -0.343 | 0.399 | 91 | 723 | -- | -- |
| 304.68 | 0.813 | 4.38 | -2.4 | 0.269 | -0.572 | 0.015 | -- | -0.302 | 0.545 | 91.58 | 772 | -- | -- |
| 282.25 | 0.782 | 4.35 | -2.69 | 0.286 | -0.656 | -- | 3.04 | -0.355 | 1.58 | 92 | 721 | -- | -- |
| 304.29 | 0.812 | 4.37 | -2.39 | 0.261 | -0.636 | -- | -- | -0.317 | 1.71 | 91.65 | 772 | -- | -- |
| 286.95 | 0.789 | 4.36 | -2.63 | -- | -0.772 | -- | 3.01 | -0.364 | -- | 92 | 751 | -- | -- |
| 311.67 | 0.828 | 4.36 | -2.47 | 0.408 | -- | 0.0367 | -- | -0.216 | 23.8 | -- | -- | -- | -- |
| 311.67 | 0.827 | 4.36 | -2.47 | 0.408 | -- | -- | -- | -0.216 | 23.8 | -- | -- | -- | -- |
| 308.05 | 0.817 | 4.38 | -2.36 | -- | -0.769 | -- | -- | -0.328 | -- | 91.17 | 809 | -- | -- |
| 451.2 | 0.989 | 4.33 | -- | 0.16 | -0.993 | -- | -- | -0.105 | 1.56 | 92 | 781 | -- | -- |
| 322.15 | 0.839 | 4.35 | -2.45 | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
| 472.05 | 1.02 | 4.3 | -- | 0.38 | -- | -- | -- | 0.059 | 23.4 | -- | -- | -- | -- |
| 452.46 | 0.991 | 4.33 | -- | -- | -1.09 | -- | -- | -0.119 | -- | 91 | 809 | -- | -- |
| 481.11 | 1.02 | 4.29 | -- | -- | -- | -- | -- | 0.0617 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 264.09 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 2 | 264.72 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 4 | 266.22 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 7 | 266.73 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 8 | 267.10 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 14 | 269.28 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 17 | 269.76 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 18 | 269.79 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 19 | 269.82 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 21 | 269.85 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 24 | 269.96 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 25 | 270.01 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 37 | 270.01 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 50 | 270.05 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 57 | 270.13 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 85 | 270.47 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 124 | 270.60 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 132 | 270.63 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 181 | 270.74 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 197 | 270.78 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 216 | 270.87 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 243 | 270.87 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 283 | 271.28 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 1 | 5 |
| 291 | 271.58 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 299 | 272.00 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 315 | 272.00 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 347 | 273.01 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 386 | 274.09 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 395 | 274.22 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 405 | 274.44 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 434 | 275.10 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 454 | 275.62 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 473 | 275.96 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 479 | 276.05 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 17 |
| 483 | 276.19 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 505 | 276.65 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 510 | 276.68 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 516 | 276.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 519 | 276.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 529 | 276.91 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 530 | 276.91 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 549 | 277.19 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 552 | 277.21 | atmosphere | 995.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 553 | 277.23 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 563 | 277.38 | wind | 9.0 | 4320 | < th | dose independent | rect. | 23 | 8 |
| 564 | 277.40 | humidity | 90.0 | 720 | > th | dose independent | rect. | 5 | 21 |
| 577 | 277.57 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 578 | 277.59 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 13 | NA |
| 579 | 277.60 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 586 | 277.68 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 603 | 277.80 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 605 | 277.80 | atmosphere | 1015.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 608 | 277.82 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 16 | 19 |
| 613 | 277.87 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 621 | 277.94 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 633 | 278.06 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 637 | 278.08 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 638 | 278.08 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 662 | 278.20 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 678 | 278.29 | humidity | 90.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 695 | 278.38 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 17 | 22 |
| 697 | 278.40 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 699 | 278.41 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 17 | 20 |
| 711 | 278.49 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 16 | 19 |
| 712 | 278.49 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 9 | 6 |
| 714 | 278.50 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 19 |
| 742 | 278.58 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 744 | 278.59 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 758 | 278.64 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 759 | 278.64 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 788 | 278.68 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 803 | 278.72 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 832 | 278.84 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 851 | 278.88 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 15 |
| 865 | 278.90 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 12 |
| 884 | 278.91 | humidity | 50.0 | 14400 | < th | dose dependent | no | NA | NA |
| 885 | 278.91 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |