Os04g0384000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0384000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 262.78 | 0.755 | 2.86 | 0.277 | 0.0221 | 0.737 | 0.721 | 0.628 | 0.116 | 8.85 | 40 | 10 | -- | -- |
| 263.39 | 0.756 | 2.86 | 0.288 | 0.027 | 0.748 | 0.892 | -- | 0.125 | 9.4 | 40.91 | 11 | -- | -- |
| 264.2 | 0.757 | 2.86 | 0.291 | 0.0175 | 0.749 | -- | 0.928 | 0.116 | 8.73 | 40.18 | 10 | -- | -- |
| 266.18 | 0.76 | 2.86 | 0.316 | 0.0178 | 0.768 | -- | -- | 0.117 | 9.13 | 40.91 | 12 | -- | -- |
| 264.22 | 0.757 | 2.86 | 0.292 | -- | 0.752 | -- | 0.931 | 0.116 | -- | 40.18 | 10 | -- | -- |
| 278.83 | 0.783 | 2.86 | 0.296 | 0.213 | -- | 0.875 | -- | 0.112 | 10.5 | -- | -- | -- | -- |
| 281.82 | 0.786 | 2.86 | 0.333 | 0.212 | -- | -- | -- | 0.116 | 11.4 | -- | -- | -- | -- |
| 266.2 | 0.76 | 2.86 | 0.315 | -- | 0.775 | -- | -- | 0.117 | -- | 40.92 | 12 | -- | -- |
| 268.79 | 0.764 | 2.87 | -- | 0.0223 | 0.769 | -- | -- | 0.0805 | 8.69 | 40.97 | 12 | -- | -- |
| 284.64 | 0.788 | 2.86 | 0.328 | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
| 284.75 | 0.789 | 2.86 | -- | 0.209 | -- | -- | -- | 0.079 | 11.3 | -- | -- | -- | -- |
| 268.82 | 0.764 | 2.87 | -- | -- | 0.779 | -- | -- | 0.0817 | -- | 40.92 | 12 | -- | -- |
| 287.47 | 0.791 | 2.87 | -- | -- | -- | -- | -- | 0.0776 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 249.29 | radiation | 40.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 2 | 249.36 | radiation | 30.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 3 | 249.38 | humidity | 60.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 5 | 249.52 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 9 | 249.52 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 12 | 249.52 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 15 | 249.54 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 19 | 250.05 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 21 | 250.23 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 25 | 250.87 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 30 | 251.27 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 31 | 251.27 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 32 | 251.27 | humidity | 90.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 36 | 251.54 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 38 | 251.67 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 43 | 251.67 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 1 |
| 44 | 251.67 | temperature | 10.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 45 | 251.67 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 46 | 251.78 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 47 | 251.94 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 48 | 251.96 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 50 | 252.04 | wind | 9.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 54 | 252.37 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 56 | 252.53 | temperature | 30.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 69 | 253.71 | wind | 9.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 72 | 254.33 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 122 | 259.18 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 126 | 259.93 | radiation | 40.0 | 10 | > th | dose independent | rect. | 9 | 4 |
| 153 | 261.27 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 12 | 4 |
| 154 | 261.28 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 13 | 23 |
| 155 | 261.28 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 156 | 261.35 | radiation | 40.0 | 10 | > th | dose independent | rect. | 12 | 23 |
| 160 | 262.05 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 186 | 262.49 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 12 | 22 |
| 187 | 262.50 | radiation | 40.0 | 10 | > th | dose independent | sin | 3 | NA |
| 194 | 262.73 | radiation | 40.0 | 10 | < th | dose independent | sin | 3 | NA |
| 197 | 262.78 | radiation | 40.0 | 10 | > th | dose independent | no | NA | NA |
| 374 | 262.87 | radiation | 40.0 | 10 | < th | dose independent | rect. | 14 | 22 |
| 399 | 263.12 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 400 | 263.13 | radiation | 40.0 | 10 | < th | dose independent | no | NA | NA |
| 414 | 263.54 | radiation | 40.0 | 10 | < th | dose independent | rect. | 24 | 12 |
| 416 | 263.59 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 423 | 263.59 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 434 | 263.63 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 470 | 264.29 | radiation | 40.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 720 | 264.79 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 23 |
| 724 | 264.81 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 729 | 264.89 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 9 | 4 |
| 775 | 265.16 | radiation | 40.0 | 10 | < th | dose independent | rect. | 9 | 23 |
| 787 | 265.35 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 1 |
| 790 | 265.35 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 13 | 1 |
| 861 | 265.63 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 9 |
| 920 | 266.18 | humidity | 50.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 921 | 266.18 | radiation | 30.0 | 10 | > th | dose dependent | sin | 3 | NA |
| 981 | 266.26 | radiation | 30.0 | 10 | > th | dose dependent | no | NA | NA |