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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0383100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0278) R2 : 0.000779
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0349 (0.0585) R2dN8 : 0.00101 R2N8 : 0.000779
σ : 0.523
deviance : 125.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.16 0.509 3.28 0.237 0.521 0.434 -1.84 -1.82 0.0895 10.7 0.4597 79 -- --
120.64 0.512 3.28 0.228 0.506 0.421 0.209 -- 0.108 10.6 0.0002044 80 -- --
119.3 0.509 3.29 0.132 0.387 0.328 -- -0.442 0.0498 10.1 0.1409 86 -- --
120.22 0.511 3.29 0.134 0.406 0.334 -- -- 0.064 10.1 0.06 80 -- --
123.68 0.518 3.32 0.0818 -- 0.13 -- -0.469 0.0413 -- 0.05999 245 -- --
121.95 0.518 3.3 0.0986 0.248 -- -0.28 -- 0.0394 5.47 -- -- -- --
122.13 0.518 3.3 0.098 0.247 -- -- -- 0.0407 5.68 -- -- -- --
122.31 0.515 3.29 0.114 -- 0.251 -- -- 0.0518 -- 7.123 604 -- --
120.67 0.512 3.29 -- 0.414 0.343 -- -- 0.0609 10.1 0.06 80 -- --
125.3 0.523 3.3 0.106 -- -- -- -- 0.0466 -- -- -- -- --
122.38 0.517 3.3 -- 0.249 -- -- -- 0.0298 5.66 -- -- -- --
122.54 0.516 3.3 -- -- 0.265 -- -- 0.0448 -- 7.377 604 -- --
125.6 0.523 3.3 -- -- -- -- -- 0.0349 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 104.06 temperature 25.0 270 > th dose independent rect. 1 1
4 104.65 temperature 25.0 90 > th dose dependent rect. 1 4
5 104.68 temperature 25.0 90 > th dose dependent rect. 2 2
12 105.44 atmosphere 1005.0 10 > th dose dependent rect. 2 3
16 106.01 wind 9.0 4320 < th dose independent rect. 3 1
18 106.51 temperature 10.0 1440 > th dose independent rect. 3 1
21 106.51 temperature 30.0 1440 < th dose independent rect. 3 1
25 106.51 humidity 50.0 1440 > th dose independent rect. 3 1
34 106.51 atmosphere 995.0 1440 > th dose independent rect. 3 1
35 106.51 radiation 1.0 1440 < th dose independent rect. 3 1
55 106.51 temperature 10.0 1440 > th dose independent rect. 4 23
58 106.51 radiation 1.0 1440 < th dose dependent rect. 3 1
101 109.17 atmosphere 1005.0 30 > th dose independent rect. 2 1
108 109.30 wind 3.0 30 < th dose independent rect. 2 1
109 109.30 wind 5.0 30 < th dose dependent rect. 2 1
117 109.37 humidity 80.0 30 > th dose independent rect. 2 1
119 109.38 humidity 50.0 30 > th dose dependent rect. 2 1
123 109.40 temperature 10.0 30 > th dose independent rect. 2 1
125 109.40 temperature 30.0 30 < th dose independent rect. 2 1
126 109.40 humidity 50.0 30 > th dose independent rect. 2 1
131 109.40 atmosphere 1010.0 30 < th dose independent rect. 2 1
133 109.40 radiation 1.0 30 < th dose independent rect. 2 1
138 109.40 precipitation 0.1 30 < th dose independent rect. 2 1
139 109.40 temperature 10.0 30 > th dose independent rect. 3 23
140 109.40 radiation 1.0 30 < th dose dependent rect. 2 1
145 109.40 precipitation 0.1 30 < th dose dependent rect. 2 1
155 109.74 atmosphere 1005.0 30 > th dose independent rect. 2 3
157 109.79 atmosphere 1015.0 30 < th dose dependent rect. 2 1
161 109.97 atmosphere 1015.0 1440 < th dose independent rect. 3 1
162 110.00 temperature 30.0 30 < th dose dependent rect. 2 1
163 110.03 wind 1.0 30 > th dose independent rect. 2 1
229 111.13 wind 9.0 30 < th dose independent rect. 3 23
232 111.19 atmosphere 995.0 90 > th dose independent rect. 3 23
242 111.46 wind 3.0 30 < th dose independent rect. 2 3
256 111.78 precipitation 0.1 30 < th dose independent rect. 3 23
257 111.78 precipitation 0.1 30 < th dose dependent rect. 3 23
258 111.79 wind 5.0 30 < th dose dependent rect. 2 3
292 111.95 atmosphere 1000.0 30 > th dose independent rect. 5 21
337 112.88 wind 9.0 10 < th dose independent rect. 5 21
339 112.92 precipitation 0.1 30 < th dose independent rect. 2 3
340 112.92 precipitation 0.1 30 < th dose dependent rect. 2 3
352 113.04 temperature 10.0 30 > th dose independent rect. 2 3
354 113.04 temperature 30.0 30 < th dose independent rect. 2 3
355 113.04 humidity 50.0 30 > th dose independent rect. 2 3
359 113.04 atmosphere 1010.0 30 < th dose independent rect. 2 3
361 113.04 radiation 1.0 30 < th dose independent rect. 2 3
366 113.04 temperature 10.0 30 > th dose independent rect. 5 21
368 113.05 radiation 10.0 30 < th dose dependent rect. 2 3
375 113.08 precipitation 0.1 30 < th dose independent rect. 5 21
376 113.08 radiation 1.0 10 < th dose dependent rect. 2 12
378 113.08 precipitation 0.1 30 < th dose dependent rect. 5 21
407 113.22 radiation 1.0 10 < th dose independent rect. 2 12
421 113.37 radiation 1.0 10 < th dose dependent rect. 2 10
425 113.41 humidity 50.0 30 > th dose independent rect. 5 21
427 113.41 atmosphere 1005.0 10 > th dose dependent rect. 4 1
428 113.41 radiation 1.0 10 < th dose dependent rect. 2 6
448 113.52 radiation 1.0 10 < th dose independent rect. 2 10
452 113.55 radiation 1.0 10 < th dose independent rect. 2 6
466 113.71 wind 9.0 1440 < th dose independent rect. 3 3
467 113.71 temperature 10.0 1440 > th dose independent rect. 3 3
470 113.71 temperature 30.0 1440 < th dose independent rect. 3 3
474 113.71 humidity 50.0 1440 > th dose independent rect. 3 3
483 113.71 atmosphere 995.0 1440 > th dose independent rect. 3 3
484 113.71 radiation 20.0 1440 < th dose independent rect. 3 3
493 113.71 temperature 10.0 1440 > th dose independent rect. 6 21
514 113.82 wind 1.0 30 > th dose independent rect. 4 1
523 113.88 humidity 50.0 30 > th dose dependent rect. 2 3
526 113.91 humidity 90.0 10 < th dose independent rect. 4 1
554 114.33 humidity 50.0 30 > th dose independent rect. 3 23
561 114.40 wind 5.0 10 < th dose independent rect. 4 1
564 114.41 temperature 30.0 30 < th dose dependent rect. 4 1
574 114.49 atmosphere 1005.0 10 > th dose independent rect. 4 1
580 114.54 temperature 10.0 10 > th dose independent rect. 4 1
582 114.54 temperature 30.0 10 < th dose independent rect. 4 1
583 114.54 humidity 50.0 10 > th dose independent rect. 4 1
586 114.54 atmosphere 995.0 10 > th dose independent rect. 4 1
587 114.54 atmosphere 1010.0 10 < th dose independent rect. 4 1
589 114.54 radiation 1.0 10 < th dose independent rect. 4 1
595 114.54 temperature 10.0 10 > th dose independent rect. 5 23
596 114.54 radiation 10.0 10 < th dose dependent rect. 4 1
607 114.58 wind 1.0 30 > th dose independent rect. 2 3
612 114.60 wind 9.0 10 < th dose dependent rect. 4 1
629 114.61 precipitation 0.1 10 < th dose independent rect. 4 1
635 114.61 precipitation 0.1 10 < th dose dependent rect. 4 1
639 114.64 humidity 90.0 270 < th dose independent rect. 1 1
650 114.68 wind 1.0 30 > th dose independent rect. 5 21
652 114.69 wind 1.0 30 > th dose dependent rect. 4 1
655 114.70 temperature 10.0 30 > th dose dependent rect. 4 1
657 114.72 humidity 50.0 30 > th dose dependent rect. 4 1
663 114.74 temperature 30.0 30 < th dose independent rect. 5 21
678 114.80 atmosphere 1015.0 30 < th dose dependent rect. 4 1
692 114.89 temperature 25.0 10 > th dose independent rect. 4 1
693 114.90 temperature 25.0 1440 < th dose independent rect. 1 1
755 115.06 temperature 10.0 30 > th dose dependent rect. 5 21
756 115.08 wind 7.0 1440 < th dose independent rect. 5 1
758 115.08 temperature 10.0 1440 > th dose independent rect. 5 1
761 115.08 temperature 30.0 1440 < th dose independent rect. 5 1
765 115.08 humidity 50.0 1440 > th dose independent rect. 5 1
774 115.08 atmosphere 995.0 1440 > th dose independent rect. 5 1
775 115.08 atmosphere 1015.0 1440 < th dose independent rect. 5 1
776 115.08 radiation 20.0 1440 < th dose independent rect. 5 1
786 115.08 temperature 10.0 1440 > th dose independent rect. 6 23
814 115.28 atmosphere 995.0 30 > th dose dependent rect. 5 21
829 115.37 humidity 90.0 10 < th dose dependent rect. 4 1
840 115.45 atmosphere 1015.0 30 < th dose independent rect. 5 21
982 115.93 radiation 1.0 30 < th dose dependent rect. 2 19
998 115.98 humidity 90.0 270 < th dose independent rect. 24 5