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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0382800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.83 (0.0502) R2 : 0.523
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.03 (0.136) R2dE : 0.511 R2E : 0.505
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.335 (0.106) R2dN8 : 0.0176 R2N8 : 0.0118
σ : 0.943
deviance : 409.63
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 12.99
memory length : 34
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22.7
open length of G : 6.92

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
384.5 0.921 3.83 0.183 0.794 2.63 -1.51 4.8 -0.376 0.275 16.28 80 23.1 6.18
399.25 0.931 3.86 -0.167 0.86 2.52 -0.0634 -- -0.47 0.401 14.5 56 23.4 6.04
390.34 0.92 3.8 0.141 0.795 2.61 -- 4.32 -0.361 0.101 16.61 64 23.4 5.98
396.49 0.927 3.87 -0.101 0.845 2.64 -- -- -0.455 0.231 15.85 46 23.5 6.01
412.97 0.946 3.83 0.0153 -- 3.17 -- 2.79 -0.424 -- 14.94 47 23.4 6.05
522.25 1.07 3.85 0.131 2.33 -- 0.768 -- -0.384 2.19 -- -- -- --
524.45 1.07 3.85 0.109 2.33 -- -- -- -0.388 2.16 -- -- -- --
414.52 0.948 3.81 -0.0956 -- 2.95 -- -- -0.324 -- 12.54 30 23.6 6.05
396.36 0.927 3.88 -- 0.876 2.57 -- -- -0.462 0.495 16.05 41 23.6 6.02
847.54 1.36 3.83 0.207 -- -- -- -- -0.332 -- -- -- -- --
524.76 1.07 3.85 -- 2.33 -- -- -- -0.4 2.16 -- -- -- --
409.63 0.943 3.83 -- -- 3.03 -- -- -0.335 -- 12.99 34 22.7 6.92
848.66 1.36 3.83 -- -- -- -- -- -0.355 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 392.62 temperature 15.0 90 > th dose dependent rect. 23 6
3 399.34 temperature 20.0 90 > th dose dependent rect. 3 2
4 401.14 temperature 20.0 90 > th dose independent rect. 3 2
14 414.32 temperature 15.0 10 > th dose dependent rect. 23 7
19 416.73 temperature 20.0 90 > th dose independent rect. 23 6
20 416.83 wind 3.0 90 < th dose dependent rect. 3 2
24 417.27 temperature 25.0 720 > th dose dependent rect. 17 8
25 417.35 humidity 80.0 90 > th dose dependent rect. 3 2
29 417.85 temperature 25.0 720 > th dose dependent rect. 17 12
48 420.31 wind 3.0 90 < th dose independent rect. 3 2
54 421.58 atmosphere 995.0 90 > th dose independent rect. 5 22
67 423.78 humidity 80.0 90 > th dose independent rect. 3 2
70 423.97 temperature 15.0 720 > th dose dependent rect. 17 6
75 424.79 humidity 70.0 720 > th dose independent rect. 19 8
85 426.20 wind 9.0 90 < th dose dependent rect. 23 6
95 426.71 precipitation 0.1 90 < th dose independent rect. 3 2
96 426.71 precipitation 0.1 90 < th dose dependent rect. 3 2
108 427.65 temperature 20.0 270 > th dose dependent rect. 1 1
111 427.87 radiation 1.0 90 < th dose dependent rect. 3 2
114 428.00 wind 9.0 90 < th dose independent rect. 5 22
119 428.13 radiation 1.0 90 < th dose independent rect. 3 2
125 428.16 temperature 10.0 90 > th dose independent rect. 3 2
127 428.16 temperature 30.0 90 < th dose independent rect. 3 2
128 428.16 humidity 50.0 90 > th dose independent rect. 3 2
131 428.16 atmosphere 995.0 90 > th dose independent rect. 3 2
132 428.16 atmosphere 1010.0 90 < th dose independent rect. 3 2
137 428.16 temperature 10.0 90 > th dose independent rect. 5 22
149 429.79 wind 5.0 90 < th dose independent rect. 23 6
150 429.83 atmosphere 995.0 90 > th dose independent rect. 5 18
153 430.26 atmosphere 1015.0 90 < th dose dependent rect. 3 2
162 430.99 atmosphere 1015.0 90 < th dose independent rect. 23 6
167 431.27 temperature 20.0 10 > th dose independent rect. 24 6
185 432.33 humidity 50.0 90 > th dose dependent rect. 23 6
187 432.53 radiation 1.0 90 < th dose dependent sin 7 NA
216 434.49 radiation 1.0 720 > th dose independent rect. 17 12
223 434.79 radiation 1.0 720 > th dose independent rect. 17 2
246 435.59 temperature 25.0 720 > th dose independent rect. 17 7
251 436.08 atmosphere 1005.0 90 > th dose independent rect. 3 2
254 436.24 precipitation 0.1 90 < th dose independent rect. 23 6
255 436.24 precipitation 0.1 90 < th dose dependent rect. 23 6
274 437.17 radiation 1.0 90 < th dose independent rect. 23 6
277 437.20 temperature 30.0 90 < th dose independent rect. 23 6
278 437.20 humidity 50.0 90 > th dose independent rect. 23 6
281 437.20 atmosphere 995.0 90 > th dose independent rect. 23 6
285 437.20 temperature 10.0 90 > th dose independent rect. 5 18
286 437.21 radiation 30.0 90 < th dose dependent rect. 23 6
301 438.00 temperature 30.0 720 < th dose dependent rect. 18 5
305 438.16 temperature 30.0 720 < th dose dependent rect. 19 2
309 438.30 temperature 30.0 720 > th dose independent rect. 17 2
325 438.60 wind 9.0 90 < th dose independent rect. 5 18
337 439.21 atmosphere 1015.0 90 < th dose independent rect. 11 18
347 439.54 precipitation 0.1 90 < th dose independent rect. 5 22
348 439.54 precipitation 0.1 90 < th dose dependent rect. 5 22
349 439.56 radiation 1.0 90 < th dose independent sin 7 NA
363 440.13 wind 9.0 90 < th dose dependent rect. 21 8
366 440.18 temperature 30.0 720 < th dose independent rect. 17 8
390 440.73 atmosphere 995.0 90 > th dose dependent rect. 3 2
402 441.19 wind 9.0 90 < th dose dependent rect. 14 15
404 441.31 wind 9.0 90 < th dose independent rect. 11 18
415 441.69 humidity 70.0 720 < th dose independent rect. 19 12
422 442.09 radiation 1.0 90 > th dose independent sin 7 NA
425 442.13 humidity 70.0 720 < th dose independent rect. 19 1
442 442.32 wind 9.0 90 < th dose independent rect. 5 6
443 442.35 temperature 10.0 90 > th dose independent rect. 5 6
444 442.35 atmosphere 995.0 90 > th dose independent rect. 5 6
445 442.35 atmosphere 1015.0 90 < th dose independent rect. 5 6
446 442.35 temperature 10.0 90 > th dose independent rect. 11 18
452 442.52 precipitation 0.1 90 < th dose independent rect. 5 6
454 442.52 precipitation 0.1 90 < th dose dependent rect. 5 6
457 442.56 temperature 10.0 90 > th dose dependent rect. 11 18
459 442.62 precipitation 0.1 90 < th dose independent rect. 5 18
460 442.62 precipitation 0.1 90 < th dose dependent rect. 5 18
467 442.93 precipitation 0.1 90 < th dose independent rect. 11 18
468 442.93 precipitation 0.1 90 < th dose dependent rect. 11 18
492 443.82 humidity 50.0 90 > th dose independent rect. 5 6
515 444.18 atmosphere 1015.0 90 < th dose dependent rect. 23 6
516 444.19 temperature 20.0 90 > th dose independent rect. 11 18
525 444.41 atmosphere 995.0 90 > th dose independent rect. 5 16
539 444.83 wind 3.0 270 < th dose dependent rect. 1 1
551 445.13 humidity 90.0 720 < th dose dependent rect. 17 6
552 445.18 humidity 70.0 720 < th dose dependent rect. 19 12
558 445.33 humidity 70.0 720 < th dose dependent rect. 19 1
570 445.35 atmosphere 1015.0 90 < th dose independent rect. 5 18
611 445.87 wind 9.0 90 < th dose dependent rect. 5 6
614 445.93 radiation 1.0 90 < th dose dependent rect. 23 17
619 446.04 radiation 1.0 90 < th dose dependent rect. 23 11
623 446.12 humidity 50.0 90 > th dose dependent rect. 21 8
628 446.22 temperature 25.0 720 > th dose dependent sin 12 NA
639 446.52 radiation 40.0 90 < th dose dependent rect. 14 15
641 446.54 radiation 1.0 90 < th dose dependent rect. 3 13
647 446.92 radiation 1.0 90 < th dose dependent rect. 3 7
654 447.08 atmosphere 1015.0 90 < th dose independent rect. 9 20
674 447.48 temperature 30.0 720 < th dose independent rect. 16 15
693 447.76 radiation 1.0 90 < th dose independent rect. 23 17
697 447.96 humidity 70.0 720 > th dose independent rect. 18 14
716 448.42 wind 7.0 90 < th dose independent rect. 14 15
723 448.59 temperature 20.0 270 > th dose independent rect. 1 1
726 448.64 wind 5.0 90 < th dose independent rect. 21 8
738 448.88 temperature 30.0 30 < th dose dependent rect. 4 1
803 449.58 radiation 1.0 90 < th dose independent rect. 23 11
814 449.77 radiation 40.0 90 < th dose independent rect. 11 18
829 450.05 wind 9.0 90 < th dose dependent rect. 5 22
837 450.24 wind 9.0 90 < th dose dependent rect. 11 18
844 450.32 temperature 20.0 10 > th dose independent rect. 10 20
868 450.66 wind 9.0 270 < th dose independent rect. 7 22
903 450.98 wind 1.0 90 > th dose independent rect. 5 6
913 451.08 precipitation 0.1 270 < th dose independent rect. 7 22
914 451.08 precipitation 0.1 270 < th dose dependent rect. 7 22
924 451.29 wind 9.0 90 < th dose independent rect. 9 20
926 451.35 humidity 70.0 1440 > th dose independent rect. 19 5
927 451.36 radiation 20.0 270 < th dose independent rect. 5 2
933 451.42 radiation 40.0 90 < th dose independent rect. 5 6
960 451.61 radiation 1.0 720 > th dose dependent rect. 17 12
961 451.64 temperature 30.0 90 < th dose independent rect. 5 6
966 451.71 radiation 1.0 10 < th dose independent rect. 4 3
988 451.84 radiation 40.0 270 < th dose dependent rect. 5 2
991 451.86 radiation 1.0 720 > th dose dependent rect. 17 2