Os04g0381600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GTPase EngC family protein.
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Os04g0381600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GTPase EngC family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.26 | 0.271 | 12.3 | 0.385 | 0.634 | 0.793 | -1.24 | 2.87 | -0.159 | 14.6 | 9.124 | 114 | -- | -- |
| 35.88 | 0.281 | 12.3 | -0.0162 | 0.603 | 0.734 | -0.601 | -- | -0.279 | 14.9 | 21.37 | 36 | -- | -- |
| 35.78 | 0.279 | 12.2 | 0.508 | 0.814 | 0.226 | -- | 2.35 | -0.0664 | 14.5 | 18.19 | 902 | -- | -- |
| 37.01 | 0.285 | 12.3 | -0.0251 | 0.612 | 0.719 | -- | -- | -0.279 | 15 | 21.22 | 3 | -- | -- |
| 50.99 | 0.333 | 12.3 | -0.112 | -- | 1.25 | -- | 0.295 | -0.365 | -- | 21.11 | 2 | -- | -- |
| 44.22 | 0.312 | 12.3 | 0.13 | 0.881 | -- | -0.423 | -- | -0.158 | 14.8 | -- | -- | -- | -- |
| 44.84 | 0.314 | 12.3 | 0.12 | 0.88 | -- | -- | -- | -0.16 | 14.8 | -- | -- | -- | -- |
| 51.03 | 0.334 | 12.3 | -0.156 | -- | 1.28 | -- | -- | -0.382 | -- | 21.19 | 6 | -- | -- |
| 37.02 | 0.285 | 12.3 | -- | 0.616 | 0.712 | -- | -- | -0.275 | 15 | 21.1 | 2 | -- | -- |
| 89.67 | 0.442 | 12.3 | 0.0824 | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
| 45.22 | 0.315 | 12.3 | -- | 0.878 | -- | -- | -- | -0.174 | 14.8 | -- | -- | -- | -- |
| 51.65 | 0.336 | 12.3 | -- | -- | 1.25 | -- | -- | -0.36 | -- | 21.26 | 3 | -- | -- |
| 89.85 | 0.442 | 12.3 | -- | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 3 | 32.08 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 6 | 32.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 17 | 32.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 29 | 32.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 38 | 32.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 50 | 32.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 56 | 32.93 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 79 | 33.08 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 107 | 33.31 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 136 | 33.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 142 | 33.54 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 21 |
| 161 | 33.63 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 165 | 33.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 170 | 33.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 173 | 33.74 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 202 | 33.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 209 | 33.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 213 | 33.88 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 244 | 34.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 263 | 34.05 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 272 | 34.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 273 | 34.08 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 275 | 34.08 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 276 | 34.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 279 | 34.09 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 296 | 34.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 318 | 34.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 367 | 34.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 371 | 34.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 9 |
| 383 | 34.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 384 | 34.26 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 385 | 34.26 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 473 | 34.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 561 | 34.40 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 562 | 34.40 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 610 | 34.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 712 | 34.49 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 965 | 34.62 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 23 |