Os04g0380500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0380500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.88 | 0.438 | 9.11 | 0.67 | 0.417 | 0.952 | 0.971 | 0.356 | -0.494 | 15.6 | 73.2 | 9106 | -- | -- |
| 87.07 | 0.435 | 9.11 | 0.63 | 0.415 | 0.981 | 0.99 | -- | -0.51 | 15.6 | 73.75 | 9116 | -- | -- |
| 89.74 | 0.441 | 9.11 | 0.696 | 0.424 | 0.944 | -- | 0.433 | -0.484 | 15.7 | 73.42 | 9116 | -- | -- |
| 89.26 | 0.44 | 9.12 | 0.635 | 0.424 | 0.989 | -- | -- | -0.569 | 15.6 | 76 | 9137 | -- | -- |
| 98.84 | 0.463 | 9.13 | 0.668 | -- | 1.05 | -- | 0.286 | -0.592 | -- | 75.84 | 9079 | -- | -- |
| 103.48 | 0.477 | 9.04 | 0.51 | 0.482 | -- | 0.968 | -- | -0.219 | 15.9 | -- | -- | -- | -- |
| 106.2 | 0.483 | 9.04 | 0.524 | 0.49 | -- | -- | -- | -0.213 | 16 | -- | -- | -- | -- |
| 98.77 | 0.463 | 9.13 | 0.632 | -- | 1.06 | -- | -- | -0.613 | -- | 76.65 | 9070 | -- | -- |
| 99.57 | 0.465 | 9.13 | -- | 0.403 | 0.914 | -- | -- | -0.615 | 15.7 | 79 | 9124 | -- | -- |
| 119.27 | 0.51 | 9.04 | 0.504 | -- | -- | -- | -- | -0.227 | -- | -- | -- | -- | -- |
| 113.43 | 0.498 | 9.05 | -- | 0.48 | -- | -- | -- | -0.272 | 16.1 | -- | -- | -- | -- |
| 108.56 | 0.485 | 9.13 | -- | -- | 0.985 | -- | -- | -0.652 | -- | 78.89 | 9079 | -- | -- |
| 125.97 | 0.524 | 9.05 | -- | -- | -- | -- | -- | -0.282 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.14 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 3 | 88.27 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 5 | 88.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 9 | 88.84 | humidity | 70 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 12 | 88.90 | humidity | 80 | 14400 | < th | dose dependent | rect. | 13 | 20 |
| 15 | 89.00 | humidity | 90 | 14400 | < th | dose dependent | rect. | 7 | 12 |
| 16 | 89.01 | humidity | 90 | 14400 | < th | dose dependent | rect. | 7 | 14 |
| 19 | 89.02 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 23 | 89.05 | humidity | 50 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 24 | 89.06 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 26 | 89.06 | humidity | 50 | 14400 | > th | dose dependent | rect. | 7 | 12 |
| 55 | 89.15 | humidity | 90 | 14400 | < th | dose dependent | sin | 23 | NA |
| 111 | 89.24 | humidity | 50 | 14400 | > th | dose dependent | sin | 0 | NA |
| 149 | 89.28 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 155 | 89.29 | humidity | 50 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 177 | 89.32 | humidity | 90 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 180 | 89.32 | humidity | 80 | 14400 | < th | dose dependent | rect. | 12 | 16 |
| 186 | 89.32 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 202 | 89.34 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 223 | 89.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 314 | 89.43 | humidity | 50 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 324 | 89.44 | humidity | 60 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 325 | 89.44 | humidity | 80 | 14400 | < th | dose dependent | no | NA | NA |
| 359 | 89.45 | humidity | 80 | 14400 | < th | dose dependent | rect. | 13 | 3 |
| 388 | 89.46 | humidity | 80 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 512 | 89.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 798 | 89.71 | humidity | 70 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 827 | 89.72 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 876 | 89.76 | humidity | 50 | 14400 | > th | dose dependent | no | NA | NA |
| 888 | 89.76 | humidity | 50 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 915 | 89.79 | humidity | 90 | 14400 | < th | dose dependent | rect. | 8 | 3 |