Os04g0379700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Violaxanthin de-epoxidase precursor.
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Os04g0379700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Violaxanthin de-epoxidase precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.03 | 0.342 | 11.5 | -1.06 | 1.4 | 0.866 | 0.506 | 2.37 | -0.372 | 1.61 | 15.08 | 93 | -- | -- |
| 55.55 | 0.347 | 11.6 | -1.39 | 1.4 | 0.757 | -0.015 | -- | -0.454 | 1.6 | 20.54 | 113 | -- | -- |
| 53.72 | 0.341 | 11.5 | -1.14 | 1.38 | 0.702 | -- | 1.55 | -0.392 | 1.59 | 18.5 | 109 | -- | -- |
| 55.52 | 0.347 | 11.6 | -1.4 | 1.4 | 0.755 | -- | -- | -0.465 | 1.64 | 20.6 | 113 | -- | -- |
| 118.62 | 0.507 | 11.5 | -1.06 | -- | 1.18 | -- | 2.22 | -0.386 | -- | 14.82 | 1017 | -- | -- |
| 64.58 | 0.377 | 11.5 | -1.24 | 1.15 | -- | -0.179 | -- | -0.339 | 1.19 | -- | -- | -- | -- |
| 64.71 | 0.377 | 11.5 | -1.24 | 1.15 | -- | -- | -- | -0.338 | 1.2 | -- | -- | -- | -- |
| 116.53 | 0.503 | 11.6 | -1.47 | -- | 0.99 | -- | -- | -0.506 | -- | 23.08 | 1027 | -- | -- |
| 103.52 | 0.474 | 11.5 | -- | 1.21 | 0.294 | -- | -- | -0.238 | 1.47 | 22 | 228 | -- | -- |
| 146.27 | 0.565 | 11.5 | -1.19 | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
| 104.98 | 0.479 | 11.5 | -- | 1.13 | -- | -- | -- | -0.2 | 1.15 | -- | -- | -- | -- |
| 168.18 | 0.606 | 11.5 | -- | -- | -0.775 | -- | -- | -0.0792 | -- | 22 | 228 | -- | -- |
| 183.74 | 0.633 | 11.5 | -- | -- | -- | -- | -- | -0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.28 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 2 | 48.57 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 5 | 49.12 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 21 | 49.92 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 21 |
| 31 | 50.21 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 44 | 50.66 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 47 | 50.74 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 49 | 50.75 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 53 | 50.92 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 54 | 50.92 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 64 | 51.07 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 71 | 51.22 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 89 | 51.61 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 91 | 51.62 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 102 | 51.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 107 | 51.80 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 108 | 51.82 | temperature | 20.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 110 | 51.83 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 21 |
| 153 | 52.22 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 155 | 52.23 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 156 | 52.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 161 | 52.31 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 162 | 52.31 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 165 | 52.32 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 171 | 52.35 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 192 | 52.45 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 200 | 52.49 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 214 | 52.59 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 219 | 52.62 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 225 | 52.66 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 231 | 52.69 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 237 | 52.71 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 238 | 52.72 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 240 | 52.73 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 13 |
| 261 | 52.82 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 13 |
| 263 | 52.82 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 269 | 52.84 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 277 | 52.86 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 290 | 52.90 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 296 | 52.92 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 315 | 52.95 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 3 | 9 |
| 326 | 52.95 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 327 | 52.95 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 346 | 52.98 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 347 | 52.98 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 358 | 53.00 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 372 | 53.03 | temperature | 15.0 | 90 | > th | dose dependent | no | NA | NA |
| 405 | 53.07 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 438 | 53.15 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 441 | 53.16 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 463 | 53.19 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 464 | 53.19 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 469 | 53.20 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 489 | 53.24 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 19 |
| 493 | 53.25 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 503 | 53.26 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 555 | 53.36 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 562 | 53.37 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 564 | 53.37 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 570 | 53.38 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 579 | 53.39 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 585 | 53.41 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 612 | 53.43 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 613 | 53.43 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 620 | 53.44 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 679 | 53.49 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 686 | 53.50 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 725 | 53.53 | temperature | 25.0 | 4320 | > th | dose independent | sin | 11 | NA |
| 732 | 53.53 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 739 | 53.53 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 781 | 53.56 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 814 | 53.60 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 865 | 53.63 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 924 | 53.66 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 953 | 53.68 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 966 | 53.70 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 970 | 53.70 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |