Os04g0379500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0379500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.35 | 0.263 | 9.91 | -0.88 | 0.239 | 0.246 | 0.972 | 0.756 | -0.115 | 1.88 | 21.3 | 7 | -- | -- |
| 33.58 | 0.27 | 9.92 | -1.07 | 0.235 | 0.221 | 0.411 | -- | -0.154 | 2.66 | 21.01 | 6 | -- | -- |
| 32.42 | 0.265 | 9.91 | -0.916 | 0.225 | 0.199 | -- | 0.694 | -0.137 | 4.8 | 21.9 | 621 | -- | -- |
| 34.06 | 0.272 | 9.92 | -1.08 | 0.246 | 0.211 | -- | -- | -0.157 | 3.27 | 21.33 | 5 | -- | -- |
| 34.17 | 0.272 | 9.9 | -0.762 | -- | 0.163 | -- | 0.929 | -0.107 | -- | 22.8 | 1030 | -- | -- |
| 35.93 | 0.281 | 9.91 | -1.02 | 0.181 | -- | 0.348 | -- | -0.105 | 3.07 | -- | -- | -- | -- |
| 36.21 | 0.282 | 9.91 | -1.03 | 0.193 | -- | -- | -- | -0.108 | 4.01 | -- | -- | -- | -- |
| 35.84 | 0.279 | 9.93 | -1.09 | -- | 0.244 | -- | -- | -0.172 | -- | 24.6 | 1128 | -- | -- |
| 63.74 | 0.374 | 9.89 | -- | 0.187 | 0.0695 | -- | -- | -0.0068 | 3.8 | 20.9 | 9 | -- | -- |
| 38.23 | 0.289 | 9.91 | -1.02 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 63.98 | 0.374 | 9.89 | -- | 0.173 | -- | -- | -- | 0.00654 | 4.1 | -- | -- | -- | -- |
| 62.98 | 0.37 | 9.88 | -- | -- | -0.248 | -- | -- | 0.0232 | -- | 29 | 375 | -- | -- |
| 65.6 | 0.378 | 9.89 | -- | -- | -- | -- | -- | 0.0104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.49 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 10 | 30.85 | temperature | 20.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 17 | 30.95 | temperature | 30.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 24 | 31.05 | temperature | 30.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 31 | 31.13 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 44 | 31.24 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 54 | 31.32 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 106 | 31.52 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 108 | 31.52 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 134 | 31.59 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 19 |
| 138 | 31.60 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 143 | 31.61 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 146 | 31.61 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 153 | 31.62 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 163 | 31.65 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 13 |
| 169 | 31.66 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 198 | 31.69 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 203 | 31.70 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 286 | 31.83 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 307 | 31.86 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 382 | 31.95 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 15 |
| 439 | 32.01 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 14 |
| 507 | 32.07 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 583 | 32.16 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 611 | 32.19 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 11 |
| 613 | 32.19 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 675 | 32.23 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 701 | 32.25 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 702 | 32.25 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 15 |
| 718 | 32.27 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 13 |
| 826 | 32.36 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 866 | 32.39 | wind | 5.0 | 270 | < th | dose independent | rect. | 16 | 11 |
| 897 | 32.41 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 941 | 32.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 946 | 32.44 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 13 |
| 952 | 32.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 953 | 32.45 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 17 |
| 956 | 32.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 990 | 32.47 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 15 |