FiT-DB / Search/ Help/ Sample detail

Os04g0379400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.3 (0.014) R2 : 0.705
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.08 (0.0343) R2dC : 0.645 R2C : 0.625
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.287 (0.0294) R2dN8 : 0.0799 R2N8 : 0.0595
σ : 0.264
deviance : 31.75
__
_____
C
peak time of C : 21.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.58 0.238 13.3 0.00348 0.99 0.773 0.304 0.0633 -0.214 21.3 0.9573 1513 -- --
25.44 0.235 13.3 -0.00126 0.975 0.785 0.289 -- -0.218 21.1 0.67 1550 -- --
25.3 0.234 13.3 0.0305 0.964 0.901 -- 0.604 -0.217 21 0.17 1559 -- --
25.7 0.236 13.3 0.055 0.976 0.806 -- -- -0.222 21 0.1739 1560 -- --
47.78 0.324 13.3 -0.123 -- 0.693 -- 0.0587 -0.283 -- 0.17 1559 -- --
30.74 0.26 13.3 -0.154 1.08 -- 0.287 -- -0.305 21.6 -- -- -- --
31.04 0.261 13.3 -0.164 1.08 -- -- -- -0.306 21.6 -- -- -- --
47.77 0.323 13.3 -0.121 -- 0.694 -- -- -0.284 -- 0.1739 1560 -- --
25.7 0.236 13.3 -- 0.977 0.782 -- -- -0.228 21 0.17 1559 -- --
100.14 0.468 13.3 -0.156 -- -- -- -- -0.308 -- -- -- -- --
31.75 0.264 13.3 -- 1.08 -- -- -- -0.287 21.6 -- -- -- --
48.16 0.324 13.3 -- -- 0.695 -- -- -0.27 -- 0.1739 1560 -- --
100.78 0.469 13.3 -- -- -- -- -- -0.291 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.49 radiation 1.0 90 < th dose dependent rect. 21 22
2 24.58 temperature 15.0 270 > th dose dependent rect. 3 5
3 24.59 temperature 15.0 270 > th dose dependent rect. 4 3
4 24.65 temperature 15.0 10 > th dose dependent rect. 5 5
25 25.02 radiation 40.0 14400 < th dose dependent rect. 24 5
27 25.03 radiation 1.0 1440 < th dose dependent rect. 18 18
28 25.06 radiation 1.0 90 < th dose independent rect. 21 22
30 25.06 humidity 50.0 90 > th dose dependent rect. 10 18
35 25.09 radiation 10.0 4320 < th dose dependent rect. 24 5
36 25.10 humidity 80.0 43200 < th dose independent rect. 4 1
37 25.10 temperature 20.0 270 > th dose dependent rect. 5 1
40 25.14 humidity 70.0 90 > th dose dependent rect. 9 19
45 25.17 temperature 10.0 90 > th dose dependent rect. 4 19
46 25.18 radiation 1.0 90 > th dose independent sin 10 NA
55 25.24 temperature 10.0 10 > th dose dependent rect. 5 18
64 25.29 temperature 20.0 270 > th dose independent rect. 4 3
69 25.31 humidity 80.0 43200 < th dose dependent rect. 5 1
71 25.32 radiation 1.0 270 > th dose independent rect. 18 13
75 25.33 humidity 50.0 10 > th dose dependent rect. 10 19
80 25.35 humidity 80.0 1440 > th dose dependent rect. 6 7
81 25.36 humidity 80.0 43200 > th dose independent rect. 5 1
84 25.36 radiation 1.0 4320 < th dose independent rect. 24 5
96 25.40 humidity 60.0 14400 < th dose independent rect. 16 4
112 25.43 humidity 60.0 14400 < th dose independent rect. 16 17
114 25.44 temperature 25.0 10 > th dose independent rect. 5 5
118 25.45 radiation 1.0 270 > th dose independent rect. 5 2
120 25.45 radiation 1.0 90 < th dose independent rect. 22 19
125 25.48 radiation 1.0 90 < th dose independent sin 10 NA
138 25.48 humidity 90.0 14400 > th dose dependent rect. 18 10
139 25.48 humidity 80.0 90 > th dose dependent rect. 7 21
146 25.49 radiation 1.0 90 < th dose dependent rect. 22 19
149 25.51 temperature 20.0 270 > th dose independent rect. 3 5
162 25.53 temperature 15.0 270 > th dose independent rect. 3 18
178 25.56 humidity 60.0 14400 > th dose independent rect. 16 4
179 25.56 radiation 1.0 1440 < th dose dependent sin 10 NA
185 25.57 wind 9.0 14400 < th dose independent rect. 5 6
197 25.58 humidity 60.0 14400 > th dose independent rect. 16 13
206 25.59 humidity 60.0 14400 > th dose independent rect. 16 11
211 25.59 radiation 1.0 1440 < th dose dependent sin 6 NA
225 25.60 radiation 1.0 90 < th dose dependent sin 10 NA
228 25.60 radiation 1.0 1440 < th dose dependent rect. 24 12
240 25.61 radiation 1.0 1440 < th dose dependent rect. 2 10
247 25.61 humidity 70.0 14400 < th dose dependent rect. 17 16
252 25.62 humidity 50.0 270 > th dose dependent rect. 8 8
264 25.63 humidity 70.0 14400 < th dose dependent rect. 17 4
319 25.66 humidity 50.0 270 > th dose dependent rect. 7 20
325 25.67 humidity 90.0 14400 > th dose dependent sin 13 NA
341 25.68 humidity 90.0 14400 > th dose dependent rect. 18 16
347 25.69 precipitation 0.1 270 < th dose independent rect. 16 15
350 25.69 wind 5.0 10 < th dose dependent rect. 5 5
357 25.69 precipitation 0.1 270 < th dose dependent rect. 16 15
419 25.74 wind 7.0 270 < th dose dependent rect. 3 6
438 25.75 wind 3.0 43200 > th dose independent rect. 6 1
439 25.75 humidity 90.0 14400 > th dose independent rect. 18 14
440 25.75 humidity 90.0 14400 > th dose independent rect. 18 16
453 25.76 humidity 90.0 14400 > th dose independent rect. 18 11
458 25.76 radiation 1.0 1440 > th dose independent rect. 18 20
476 25.77 radiation 1.0 1440 < th dose independent rect. 18 20
493 25.78 wind 1.0 270 > th dose independent rect. 7 9
511 25.79 humidity 90.0 14400 > th dose independent rect. 2 8
512 25.79 precipitation 0.1 270 < th dose independent rect. 3 18
519 25.79 precipitation 0.1 270 < th dose dependent rect. 3 18
523 25.80 wind 3.0 43200 < th dose independent rect. 6 1
538 25.80 radiation 1.0 270 < th dose dependent rect. 5 23
546 25.81 wind 5.0 270 < th dose independent rect. 21 6
555 25.81 humidity 80.0 270 > th dose independent rect. 7 20
574 25.82 wind 9.0 14400 < th dose independent rect. 7 4
584 25.83 humidity 80.0 43200 < th dose independent rect. 23 1
587 25.83 wind 9.0 270 < th dose independent rect. 7 10
591 25.83 humidity 80.0 1440 > th dose dependent rect. 10 3
604 25.83 humidity 90.0 14400 > th dose dependent rect. 7 22
608 25.84 temperature 15.0 270 > th dose independent rect. 16 15
630 25.85 wind 7.0 270 < th dose dependent rect. 4 3
635 25.85 temperature 10.0 270 > th dose dependent rect. 16 16
647 25.86 radiation 1.0 1440 > th dose independent rect. 16 20
672 25.87 temperature 15.0 270 > th dose independent rect. 1 22
710 25.89 humidity 60.0 14400 < th dose independent sin 12 NA
711 25.89 wind 3.0 43200 > th dose independent rect. 11 2
712 25.89 radiation 1.0 90 < th dose independent rect. 22 10
720 25.89 radiation 1.0 1440 < th dose independent rect. 16 19
740 25.90 wind 3.0 10 < th dose independent rect. 5 5
758 25.90 radiation 1.0 1440 < th dose dependent rect. 18 11
766 25.90 humidity 90.0 14400 > th dose dependent rect. 24 23
767 25.91 humidity 90.0 14400 > th dose independent sin 12 NA
771 25.91 radiation 30.0 270 < th dose independent rect. 16 15
786 25.91 radiation 1.0 90 < th dose dependent rect. 22 10
790 25.91 humidity 60.0 14400 < th dose dependent rect. 16 18
802 25.92 humidity 90.0 14400 > th dose independent rect. 19 6
840 25.93 temperature 10.0 270 > th dose independent rect. 7 9
841 25.93 atmosphere 1015.0 270 < th dose independent rect. 7 9
866 25.94 wind 5.0 43200 < th dose dependent rect. 11 2
887 25.95 humidity 90.0 14400 > th dose dependent no NA NA
912 25.96 wind 3.0 43200 < th dose independent rect. 1 6
920 25.96 wind 9.0 270 < th dose independent rect. 7 21
939 25.97 wind 3.0 43200 < th dose independent rect. 11 1
945 25.97 wind 3.0 43200 < th dose independent rect. 1 13
966 25.98 wind 3.0 43200 > th dose independent rect. 2 13
973 25.98 atmosphere 995.0 270 > th dose independent rect. 16 15
981 25.98 radiation 1.0 1440 < th dose dependent rect. 18 2