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Os04g0378400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0219) R2 : 0.188
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.473 (0.0461) R2dN8 : 0.243 R2N8 : 0.188
σ : 0.412
deviance : 77.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.42 0.34 11.3 -0.567 0.11 0.352 -1.37 0.68 0.368 13.7 21 17 -- --
54.38 0.346 11.3 -0.732 0.134 0.323 -0.936 -- 0.335 14.1 21 48 -- --
57.27 0.355 11.3 -0.735 0.162 0.321 -- 0.102 0.337 16.1 21 17 -- --
57.33 0.355 11.3 -0.758 0.163 0.318 -- -- 0.332 16.1 21.06 48 -- --
58.52 0.358 11.3 -0.765 -- 0.354 -- 0.0798 0.318 -- 21.39 22 -- --
59.41 0.361 11.3 -0.653 0.232 -- -0.886 -- 0.408 14.3 -- -- -- --
62.19 0.369 11.3 -0.678 0.239 -- -- -- 0.403 15 -- -- -- --
58.56 0.358 11.3 -0.784 -- 0.352 -- -- 0.314 -- 21.4 20 -- --
71.96 0.397 11.3 -- 0.2 0.217 -- -- 0.436 15.6 21.06 48 -- --
65.46 0.378 11.3 -0.688 -- -- -- -- 0.397 -- -- -- -- --
74.3 0.403 11.3 -- 0.252 -- -- -- 0.479 15 -- -- -- --
74.04 0.402 11.3 -- -- 0.267 -- -- 0.422 -- 21 48 -- --
77.95 0.412 11.3 -- -- -- -- -- 0.473 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.12 temperature 15.0 270 > th dose dependent rect. 18 8
4 49.46 temperature 20.0 30 > th dose independent rect. 18 10
8 50.06 temperature 20.0 90 > th dose independent rect. 7 21
29 50.99 temperature 20.0 90 > th dose dependent rect. 20 8
33 51.14 wind 1.0 270 > th dose independent rect. 12 19
36 51.19 radiation 10.0 10 < th dose independent rect. 5 13
38 51.21 wind 1.0 270 > th dose independent rect. 13 17
41 51.24 temperature 30.0 270 < th dose dependent rect. 21 9
42 51.26 temperature 20.0 10 > th dose independent rect. 18 19
59 51.49 radiation 30.0 10 < th dose dependent rect. 5 13
64 51.53 temperature 20.0 90 > th dose independent rect. 20 8
84 51.83 wind 3.0 14400 > th dose independent rect. 5 2
85 51.83 wind 3.0 14400 < th dose independent rect. 4 3
89 51.85 radiation 1.0 30 < th dose dependent sin 12 NA
94 51.87 temperature 30.0 270 < th dose dependent rect. 14 16
99 51.90 wind 1.0 270 > th dose independent rect. 2 15
100 51.91 temperature 20.0 10 > th dose independent rect. 18 21
115 52.02 wind 7.0 270 < th dose independent rect. 7 5
126 52.08 radiation 10.0 270 < th dose independent rect. 17 9
129 52.10 wind 1.0 270 > th dose independent rect. 1 6
146 52.17 precipitation 0.1 270 < th dose independent rect. 2 15
149 52.17 precipitation 0.1 270 < th dose dependent rect. 2 15
151 52.18 temperature 15.0 270 > th dose independent rect. 7 5
153 52.19 wind 1.0 270 > th dose independent rect. 3 3
157 52.20 radiation 10.0 270 < th dose dependent rect. 2 8
168 52.24 temperature 30.0 90 < th dose dependent rect. 23 8
169 52.25 wind 9.0 270 < th dose independent rect. 17 9
171 52.25 humidity 70.0 30 > th dose independent rect. 18 10
191 52.31 humidity 50.0 270 > th dose independent rect. 17 9
201 52.34 precipitation 0.1 270 < th dose independent rect. 13 17
205 52.34 precipitation 0.1 270 < th dose dependent rect. 13 17
206 52.35 radiation 10.0 270 < th dose independent rect. 2 5
211 52.36 humidity 50.0 270 > th dose independent rect. 6 20
228 52.40 radiation 1.0 270 > th dose independent rect. 7 5
229 52.40 temperature 10.0 270 > th dose independent rect. 17 9
233 52.40 temperature 10.0 270 > th dose independent rect. 2 15
234 52.40 atmosphere 1015.0 270 < th dose independent rect. 2 15
237 52.40 radiation 40.0 270 < th dose dependent rect. 17 9
242 52.41 precipitation 0.1 270 < th dose independent rect. 12 19
245 52.41 precipitation 0.1 270 < th dose dependent rect. 12 19
252 52.43 radiation 10.0 270 < th dose dependent rect. 2 15
261 52.45 radiation 10.0 270 < th dose dependent rect. 2 11
272 52.49 radiation 1.0 30 < th dose independent sin 12 NA
275 52.49 precipitation 0.1 90 < th dose independent rect. 15 16
277 52.49 precipitation 0.1 90 < th dose dependent rect. 15 16
281 52.51 atmosphere 995.0 270 > th dose independent rect. 2 15
307 52.56 precipitation 0.1 270 < th dose independent rect. 6 7
308 52.56 temperature 20.0 10 > th dose independent rect. 20 17
309 52.56 precipitation 0.1 270 < th dose dependent rect. 6 7
314 52.57 wind 5.0 14400 < th dose dependent rect. 5 2
322 52.59 atmosphere 995.0 270 > th dose independent rect. 13 17
325 52.60 atmosphere 995.0 270 > th dose independent rect. 6 7
326 52.60 atmosphere 1015.0 270 < th dose independent rect. 6 7
328 52.60 temperature 10.0 270 > th dose independent rect. 13 17
330 52.61 radiation 1.0 30 > th dose independent sin 12 NA
331 52.61 precipitation 0.1 270 < th dose independent rect. 7 5
334 52.61 precipitation 0.1 270 < th dose dependent rect. 7 5
353 52.64 precipitation 0.1 270 < th dose independent rect. 17 9
357 52.64 precipitation 0.1 270 < th dose dependent rect. 17 9
361 52.65 atmosphere 995.0 270 > th dose independent rect. 7 5
362 52.65 atmosphere 1015.0 270 < th dose independent rect. 7 5
363 52.65 temperature 30.0 270 < th dose independent rect. 7 6
365 52.65 temperature 10.0 270 > th dose independent rect. 12 19
384 52.69 humidity 50.0 270 > th dose independent rect. 6 7
387 52.69 atmosphere 995.0 270 > th dose dependent rect. 2 4
398 52.71 radiation 10.0 10 < th dose independent sin 1 NA
400 52.71 wind 1.0 270 > th dose independent rect. 7 5
402 52.71 atmosphere 1000.0 90 > th dose independent rect. 15 16
404 52.71 humidity 50.0 30 > th dose dependent rect. 18 10
410 52.73 radiation 1.0 30 > th dose independent rect. 12 19
415 52.74 wind 9.0 270 < th dose independent rect. 7 19
422 52.75 humidity 90.0 10 < th dose independent rect. 2 5
462 52.80 wind 9.0 270 < th dose independent rect. 6 21
471 52.81 atmosphere 995.0 270 > th dose independent rect. 17 9
484 52.82 temperature 20.0 90 > th dose independent rect. 20 16
487 52.82 atmosphere 995.0 270 > th dose dependent rect. 1 6
495 52.83 radiation 40.0 90 < th dose independent rect. 15 16
498 52.84 temperature 10.0 30 > th dose independent rect. 18 10
499 52.84 humidity 50.0 30 > th dose independent rect. 18 10
500 52.84 radiation 20.0 30 < th dose independent rect. 18 10
504 52.84 temperature 10.0 30 > th dose independent rect. 4 14
506 52.84 atmosphere 1015.0 30 < th dose independent rect. 4 14
509 52.84 wind 1.0 14400 > th dose dependent rect. 5 2
511 52.84 radiation 20.0 30 < th dose dependent rect. 18 10
517 52.85 atmosphere 995.0 30 > th dose independent rect. 18 10
527 52.86 wind 9.0 30 < th dose independent rect. 18 10
529 52.86 precipitation 0.1 30 < th dose independent rect. 4 14
530 52.86 wind 9.0 270 < th dose independent rect. 2 15
531 52.86 temperature 10.0 90 > th dose independent rect. 15 16
535 52.86 precipitation 0.1 30 < th dose dependent rect. 4 14
540 52.87 wind 1.0 90 > th dose independent rect. 7 8
544 52.87 wind 1.0 90 > th dose independent rect. 15 16
545 52.87 radiation 1.0 30 > th dose independent rect. 15 16
559 52.88 wind 9.0 270 < th dose independent rect. 12 19
575 52.90 humidity 70.0 270 > th dose independent rect. 2 5
577 52.90 wind 9.0 270 < th dose independent rect. 13 17
589 52.91 temperature 10.0 270 > th dose dependent rect. 2 5
603 52.93 precipitation 0.1 270 < th dose independent rect. 2 5
607 52.93 precipitation 0.1 270 < th dose dependent rect. 2 5
615 52.94 wind 7.0 270 < th dose independent rect. 2 5
666 52.97 radiation 40.0 90 < th dose independent rect. 13 18
693 52.99 radiation 10.0 270 < th dose independent rect. 2 15
702 53.00 precipitation 0.1 270 < th dose independent rect. 3 3
706 53.00 precipitation 0.1 270 < th dose dependent rect. 3 3
712 53.01 temperature 10.0 270 > th dose independent rect. 2 5
714 53.01 temperature 30.0 270 < th dose independent rect. 2 5
715 53.01 humidity 50.0 270 > th dose independent rect. 2 5
717 53.01 atmosphere 995.0 270 > th dose independent rect. 2 5
718 53.01 atmosphere 1015.0 270 < th dose independent rect. 2 5
725 53.01 temperature 10.0 270 > th dose independent rect. 7 19
727 53.01 temperature 10.0 270 > th dose dependent rect. 3 3
746 53.03 radiation 10.0 270 < th dose dependent sin 4 NA
756 53.04 precipitation 0.1 4320 > th dose dependent rect. 3 3
763 53.05 radiation 10.0 90 < th dose independent rect. 4 6
768 53.05 wind 1.0 30 > th dose independent rect. 4 14
807 53.08 atmosphere 995.0 30 > th dose independent rect. 4 14
824 53.09 precipitation 0.1 270 < th dose independent rect. 7 19
833 53.09 precipitation 0.1 270 < th dose dependent rect. 7 19
836 53.10 atmosphere 1010.0 270 < th dose independent rect. 3 3
850 53.11 precipitation 0.1 4320 < th dose independent rect. 3 3
851 53.11 temperature 30.0 270 < th dose independent rect. 18 8
863 53.11 temperature 25.0 90 < th dose dependent sin 9 NA
865 53.11 precipitation 0.1 4320 < th dose dependent rect. 3 3
876 53.12 temperature 10.0 270 > th dose independent rect. 3 3
878 53.12 temperature 30.0 270 < th dose independent rect. 3 3
879 53.12 humidity 50.0 270 > th dose independent rect. 3 3
882 53.12 atmosphere 995.0 270 > th dose independent rect. 3 3
893 53.12 temperature 10.0 270 > th dose independent rect. 6 21
906 53.13 precipitation 0.1 4320 > th dose independent rect. 4 2
921 53.14 wind 3.0 14400 < th dose independent sin 8 NA
934 53.14 radiation 1.0 30 > th dose independent rect. 12 21
941 53.15 wind 1.0 1440 < th dose independent rect. 12 1
964 53.15 radiation 20.0 10 < th dose independent rect. 4 6
965 53.15 wind 9.0 90 < th dose independent rect. 15 16
971 53.15 wind 3.0 14400 < th dose dependent sin 8 NA
988 53.16 temperature 30.0 270 < th dose independent rect. 7 18