Os04g0376500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h).
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Os04g0376500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.9 | 0.325 | 12.9 | -0.545 | 0.631 | 0.175 | 0.584 | -1.84 | -0.173 | 18.3 | 20.3 | 2934 | -- | -- |
| 52.32 | 0.337 | 12.9 | -0.275 | 0.617 | 0.709 | 0.8 | -- | -0.0711 | 18.4 | 16.7 | 5538 | -- | -- |
| 48.61 | 0.325 | 12.9 | -0.527 | 0.634 | 0.191 | -- | -1.82 | -0.162 | 18.2 | 19.82 | 2863 | -- | -- |
| 52.66 | 0.338 | 12.9 | -0.286 | 0.658 | 0.629 | -- | -- | -0.0957 | 17.9 | 19 | 2743 | -- | -- |
| 69.48 | 0.388 | 12.9 | -0.507 | -- | 0.176 | -- | -1.74 | -0.16 | -- | 19.76 | 2890 | -- | -- |
| 57.72 | 0.356 | 12.8 | 0.0359 | 0.617 | -- | 0.735 | -- | 0.0229 | 18.4 | -- | -- | -- | -- |
| 59.04 | 0.36 | 12.8 | 0.0272 | 0.621 | -- | -- | -- | 0.0257 | 18.3 | -- | -- | -- | -- |
| 72.86 | 0.398 | 12.8 | -0.241 | -- | 0.607 | -- | -- | -0.0842 | -- | 19.02 | 1983 | -- | -- |
| 54.11 | 0.343 | 12.9 | -- | 0.626 | 0.48 | -- | -- | -0.0482 | 18.1 | 19.1 | 2736 | -- | -- |
| 79.04 | 0.415 | 12.8 | 0.0104 | -- | -- | -- | -- | 0.0121 | -- | -- | -- | -- | -- |
| 59.06 | 0.359 | 12.8 | -- | 0.621 | -- | -- | -- | 0.0226 | 18.3 | -- | -- | -- | -- |
| 74.07 | 0.401 | 12.8 | -- | -- | 0.526 | -- | -- | -0.0544 | -- | 19.08 | 1864 | -- | -- |
| 79.05 | 0.415 | 12.8 | -- | -- | -- | -- | -- | 0.011 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.95 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 2 | 46.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 3 | 47.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 5 | 47.36 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 6 | 47.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 7 | 47.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 8 | 47.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 10 | 47.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 11 | 47.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 12 | 47.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 17 | 47.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 28 | 47.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 30 | 47.58 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 53 | 47.68 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 72 | 47.79 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 77 | 47.81 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 84 | 47.84 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 88 | 47.85 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 132 | 48.01 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 147 | 48.06 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 19 |
| 150 | 48.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 174 | 48.13 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 192 | 48.19 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 249 | 48.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 327 | 48.47 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 380 | 48.54 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 400 | 48.57 | radiation | 30 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 410 | 48.58 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 421 | 48.60 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 423 | 48.60 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 425 | 48.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 429 | 48.61 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 444 | 48.62 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 446 | 48.63 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 511 | 48.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 513 | 48.66 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 559 | 48.71 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 580 | 48.72 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 581 | 48.72 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 599 | 48.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 600 | 48.74 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 612 | 48.76 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 613 | 48.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 620 | 48.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 632 | 48.77 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 663 | 48.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 668 | 48.81 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 687 | 48.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 719 | 48.83 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 728 | 48.84 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 729 | 48.84 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 749 | 48.85 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 750 | 48.85 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 776 | 48.88 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 791 | 48.89 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 801 | 48.90 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 839 | 48.92 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 842 | 48.93 | atmosphere | 995 | 43200 | < th | dose independent | sin | 7 | NA |
| 861 | 48.94 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 862 | 48.94 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 874 | 48.95 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 875 | 48.95 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 878 | 48.95 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 893 | 48.95 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 932 | 48.98 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |