Os04g0375300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os04g0375300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.97 | 0.651 | 2.85 | -0.0398 | 0.00592 | -1.37 | -0.996 | 6.32 | -0.164 | 0.539 | 50.61 | 4084 | -- | -- |
| 212.38 | 0.679 | 2.97 | -0.0473 | 0.0172 | -0.257 | 0.794 | -- | -0.187 | 13 | 57.78 | 267 | -- | -- |
| 196.16 | 0.652 | 2.85 | 0.00821 | 0.00752 | -1.37 | -- | 6.14 | -0.161 | 23.9 | 50.68 | 4099 | -- | -- |
| 213.71 | 0.681 | 2.96 | 0.0297 | 0.0212 | -0.21 | -- | -- | -0.152 | 0.608 | 78 | 1313 | -- | -- |
| 196.15 | 0.652 | 2.85 | 0.000582 | -- | -1.26 | -- | 5.87 | -0.165 | -- | 51 | 4100 | -- | -- |
| 212.77 | 0.684 | 2.97 | -0.0525 | 0.00528 | -- | -0.743 | -- | -0.165 | 0.754 | -- | -- | -- | -- |
| 215.1 | 0.687 | 2.97 | -0.0244 | 0.0184 | -- | -- | -- | -0.161 | 20.1 | -- | -- | -- | -- |
| 213.59 | 0.681 | 2.97 | 0.00588 | -- | -0.244 | -- | -- | -0.165 | -- | 85.66 | 1486 | -- | -- |
| 213.49 | 0.681 | 2.97 | -- | 0.0459 | -0.264 | -- | -- | -0.168 | 0.394 | 83.03 | 1277 | -- | -- |
| 215.12 | 0.685 | 2.97 | -0.0246 | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
| 215.12 | 0.686 | 2.97 | -- | 0.0186 | -- | -- | -- | -0.159 | 20 | -- | -- | -- | -- |
| 213.59 | 0.681 | 2.97 | -- | -- | -0.243 | -- | -- | -0.166 | -- | 86 | 1486 | -- | -- |
| 215.14 | 0.685 | 2.97 | -- | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 185.14 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 16 | 191.22 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 20 | 191.22 | wind | 5 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 25 | 191.57 | wind | 7 | 90 | > th | dose independent | rect. | 8 | 1 |
| 26 | 191.89 | humidity | 90 | 90 | > th | dose independent | rect. | 8 | 1 |
| 31 | 192.13 | wind | 1 | 30 | < th | dose independent | rect. | 2 | 2 |
| 40 | 192.43 | humidity | 90 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 46 | 192.97 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 22 |
| 49 | 193.11 | humidity | 50 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 51 | 193.35 | humidity | 50 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 52 | 193.37 | humidity | 50 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 53 | 193.38 | humidity | 50 | 4320 | > th | dose independent | rect. | 9 | 8 |
| 58 | 193.41 | humidity | 50 | 4320 | > th | dose independent | rect. | 6 | 11 |
| 59 | 193.41 | humidity | 50 | 4320 | > th | dose independent | rect. | 22 | 19 |
| 65 | 193.43 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 70 | 193.54 | humidity | 50 | 4320 | < th | dose independent | sin | 3 | NA |
| 74 | 193.56 | humidity | 50 | 4320 | < th | dose independent | rect. | 9 | 8 |
| 94 | 193.57 | humidity | 50 | 4320 | > th | dose independent | rect. | 3 | 20 |
| 96 | 193.59 | humidity | 50 | 4320 | > th | dose independent | sin | 0 | NA |
| 99 | 193.60 | humidity | 50 | 4320 | > th | dose independent | rect. | 9 | 14 |
| 111 | 193.61 | humidity | 50 | 4320 | > th | dose independent | rect. | 9 | 22 |
| 118 | 193.62 | humidity | 50 | 4320 | > th | dose independent | rect. | 9 | 20 |
| 129 | 193.63 | humidity | 50 | 4320 | > th | dose independent | rect. | 6 | 17 |
| 155 | 193.65 | humidity | 50 | 4320 | > th | dose independent | no | NA | NA |
| 168 | 193.65 | humidity | 50 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 243 | 193.78 | humidity | 50 | 4320 | < th | dose dependent | rect. | 11 | 6 |
| 265 | 193.81 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 271 | 193.88 | humidity | 50 | 4320 | < th | dose independent | no | NA | NA |
| 395 | 193.89 | humidity | 50 | 4320 | < th | dose dependent | rect. | 13 | 23 |
| 440 | 193.92 | humidity | 50 | 4320 | < th | dose dependent | sin | 20 | NA |
| 442 | 193.93 | humidity | 50 | 4320 | < th | dose independent | rect. | 11 | 4 |
| 446 | 193.93 | humidity | 50 | 4320 | < th | dose dependent | no | NA | NA |
| 476 | 193.93 | wind | 9 | 90 | > th | dose dependent | rect. | 19 | 15 |
| 593 | 193.94 | wind | 9 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 609 | 193.96 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 23 |
| 680 | 194.14 | humidity | 50 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 734 | 194.20 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 756 | 194.24 | humidity | 50 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 865 | 194.77 | humidity | 50 | 4320 | < th | dose independent | sin | 9 | NA |
| 902 | 195.02 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 18 | 6 |
| 906 | 195.09 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 909 | 195.12 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 960 | 195.24 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 11 |
| 963 | 195.25 | humidity | 50 | 4320 | < th | dose dependent | sin | 9 | NA |
| 985 | 195.36 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 1000 | 195.47 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 18 | 6 |