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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0374800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0474) R2 : 0.0811
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.64 (0.611) R2dE : 0.0717 R2E : 0.0715
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.192 (0.0998) R2dN8 : 0.0096 R2N8 : 0.00934
σ : 0.89
deviance : 365.49
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.4705
memory length : 100
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.94
open length of G : 0.441

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
358.16 0.889 3 -0.131 0.201 3.68 -0.5 9.37 -0.221 5.33 0.5 29 1.85 0.167
364.64 0.896 3 -0.122 0.2 3.62 -0.36 -- -0.215 5.58 0.4999 52 1.93 0.193
358.77 0.889 3 -0.14 0.199 2.99 -- 5.7 -0.218 5.53 0.5 29 1.85 0.167
364.96 0.896 3 -0.124 0.198 3.61 -- -- -0.214 5.54 0.4342 13 1.97 0.0127
358.93 0.882 3 -0.132 -- 3.36 -- 7.16 -0.218 -- 0.4473 105 1.9 0.398
390.52 0.926 3 -0.103 0.243 -- -0.24 -- -0.234 4.93 -- -- -- --
390.66 0.926 3 -0.103 0.241 -- -- -- -0.233 4.78 -- -- -- --
365.09 0.89 3 -0.122 -- 3.66 -- -- -0.205 -- 0.481 100 1.94 0.429
365.36 0.895 3 -- 0.196 3.6 -- -- -0.2 5.56 0.418 15 1.97 0.0616
393.74 0.927 3.01 -0.0938 -- -- -- -- -0.227 -- -- -- -- --
390.94 0.925 3 -- 0.239 -- -- -- -0.221 4.8 -- -- -- --
365.49 0.89 3 -- -- 3.64 -- -- -0.192 -- 0.4705 100 1.94 0.441
393.97 0.926 3 -- -- -- -- -- -0.216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 359.53 wind 1.0 10 < th dose dependent rect. 1 1
3 362.39 wind 7.0 1440 < th dose independent rect. 2 2
7 364.47 wind 1.0 10 < th dose independent rect. 22 1
9 364.47 wind 1.0 10 < th dose dependent rect. 22 1
13 365.59 wind 1.0 10 < th dose independent rect. 1 1
15 366.39 wind 1.0 10 < th dose dependent rect. 15 8
16 366.44 wind 1.0 10 < th dose dependent rect. 17 6
24 366.71 wind 5.0 1440 > th dose independent rect. 3 1
25 366.72 wind 3.0 1440 > th dose dependent rect. 3 1
37 367.44 wind 7.0 1440 < th dose independent rect. 2 5
40 367.54 wind 1.0 10 < th dose dependent rect. 11 12
50 367.99 wind 7.0 1440 > th dose independent rect. 24 4
52 368.00 radiation 1.0 30 < th dose dependent rect. 7 1
63 368.40 wind 5.0 1440 > th dose dependent rect. 24 4
81 369.16 wind 7.0 1440 > th dose independent rect. 23 10
84 369.20 temperature 15.0 43200 > th dose independent rect. 20 1
100 369.49 wind 7.0 1440 > th dose dependent rect. 23 10
115 369.70 wind 7.0 30 > th dose dependent rect. 3 5
134 370.04 wind 7.0 30 > th dose independent rect. 3 5
139 370.06 temperature 15.0 43200 < th dose independent rect. 20 1
148 370.35 radiation 10.0 1440 < th dose dependent rect. 17 15
154 370.46 radiation 1.0 90 < th dose independent rect. 7 1
163 370.76 wind 7.0 1440 > th dose independent rect. 2 6
170 370.82 temperature 20.0 30 < th dose independent rect. 7 1
173 370.82 temperature 20.0 30 < th dose dependent rect. 7 1
261 371.56 humidity 90.0 10 > th dose dependent rect. 6 6
276 371.64 radiation 10.0 1440 < th dose dependent sin 11 NA
277 371.65 radiation 10.0 1440 < th dose dependent rect. 4 4
280 371.69 radiation 10.0 1440 < th dose dependent rect. 21 11
309 371.87 humidity 90.0 10 > th dose dependent rect. 6 3
315 371.90 radiation 30.0 14400 < th dose independent rect. 2 5
320 371.92 radiation 10.0 1440 < th dose independent rect. 17 15
345 372.02 wind 9.0 14400 < th dose independent rect. 1 2
357 372.06 radiation 10.0 1440 < th dose independent rect. 16 17
366 372.13 radiation 10.0 1440 < th dose independent sin 11 NA
367 372.13 radiation 1.0 1440 > th dose dependent rect. 18 13
371 372.15 wind 3.0 10 > th dose dependent rect. 3 2
372 372.16 wind 3.0 10 > th dose independent rect. 3 1
377 372.17 temperature 20.0 43200 < th dose dependent rect. 16 1
381 372.19 radiation 10.0 1440 < th dose independent rect. 18 13
382 372.19 humidity 90.0 10 > th dose dependent rect. 6 12
384 372.22 humidity 90.0 10 > th dose dependent rect. 8 1
391 372.26 radiation 10.0 1440 < th dose independent rect. 4 3
406 372.31 temperature 15.0 43200 > th dose independent rect. 13 2
407 372.31 precipitation 0.1 1440 > th dose dependent rect. 3 1
408 372.32 precipitation 0.1 1440 > th dose independent rect. 3 1
410 372.34 temperature 15.0 43200 < th dose independent rect. 13 1
421 372.35 temperature 15.0 43200 > th dose independent rect. 13 8
422 372.35 radiation 10.0 1440 < th dose independent rect. 22 9
444 372.38 wind 3.0 90 > th dose dependent rect. 2 1
482 372.54 radiation 30.0 14400 < th dose independent rect. 19 12
556 372.69 temperature 15.0 43200 < th dose independent rect. 13 8
566 372.71 radiation 30.0 14400 < th dose independent rect. 21 10
577 372.75 radiation 1.0 1440 > th dose dependent rect. 4 3
587 372.75 radiation 10.0 1440 < th dose dependent rect. 17 19
639 372.92 temperature 30.0 30 > th dose independent sin 4 NA
695 373.12 temperature 15.0 43200 > th dose independent sin 17 NA
697 373.12 temperature 15.0 43200 > th dose independent rect. 4 18
711 373.15 wind 9.0 1440 > th dose dependent rect. 22 1
732 373.19 temperature 15.0 43200 > th dose independent rect. 13 19
735 373.20 precipitation 0.1 1440 < th dose independent rect. 3 1
738 373.20 precipitation 0.1 1440 < th dose dependent rect. 3 1
744 373.21 radiation 40.0 1440 < th dose dependent rect. 4 3
764 373.25 radiation 40.0 14400 < th dose independent rect. 16 16
771 373.26 radiation 30.0 14400 < th dose independent rect. 23 8
775 373.27 temperature 30.0 30 < th dose independent sin 7 NA
813 373.31 temperature 15.0 43200 > th dose independent rect. 6 1
814 373.31 temperature 15.0 43200 > th dose independent rect. 5 3
827 373.32 temperature 30.0 10 > th dose independent rect. 9 7
877 373.36 temperature 15.0 43200 < th dose independent sin 17 NA
914 373.40 radiation 1.0 14400 < th dose dependent rect. 7 8
939 373.44 radiation 30.0 14400 < th dose independent rect. 6 1
952 373.45 temperature 15.0 43200 < th dose independent rect. 13 16