FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0374000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0446) R2 : 0.167
β1 : -0.0408 (0.171) R2dD : 4.52e-05 R2D : -0.00207
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.23 (0.422) R2dE : 0.00108 R2E : 0.018
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -24 (3.77) R2dD*E : 0.154 R2D*E : 0.162
γ1 : -0.138 (0.0968) R2dN8 : 0.00518 R2N8 : -0.00413
σ : 0.825
deviance : 313.97
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 79.92
memory length : 30
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2
open length of G : 0.957

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
307.82 0.824 2.97 -0.05 0.00523 0.143 1.67 -23.9 -0.139 16.5 80.39 30 2.02 0.994
330.92 0.854 3 0.313 0.00419 2.01 -1.98 -- -0.145 4.27 55.62 50 2.31 0.676
313.38 0.824 2.96 -0.107 0.107 0.0447 -- -25.6 -0.131 23.8 80.19 30 2 0.963
340.66 0.865 3 0.331 0.134 2.08 -- -- -0.139 21.6 73.16 10 3.01 0.296
313.97 0.825 2.97 -0.0408 -- 0.23 -- -24 -0.138 -- 79.92 30 2 0.957
359.67 0.889 2.97 0.302 0.153 -- -2.14 -- 0.00543 3.93 -- -- -- --
371.46 0.903 2.97 0.329 0.206 -- -- -- 0.0179 0.434 -- -- -- --
341.72 0.865 3 0.332 -- 2.09 -- -- -0.14 -- 75.3 9 3 0.434
343.54 0.868 3.01 -- 0.135 2.08 -- -- -0.176 21.8 73.16 10 3.01 0.296
374.12 0.904 2.96 0.336 -- -- -- -- 0.0212 -- -- -- -- --
374.31 0.905 2.97 -- 0.211 -- -- -- -0.0187 0.513 -- -- -- --
344.63 0.867 3.01 -- -- 2.1 -- -- -0.177 -- 75.3 9 3 0.434
377.09 0.906 2.97 -- -- -- -- -- -0.016 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 306.49 radiation 1.0 43200 < th dose dependent rect. 3 1
2 307.83 humidity 80.0 30 > th dose dependent rect. 2 1
3 308.07 atmosphere 1015.0 30 < th dose dependent rect. 2 1
4 308.16 humidity 90.0 30 > th dose independent rect. 2 1
9 308.44 wind 5.0 30 < th dose independent rect. 2 1
12 308.60 temperature 25.0 30 < th dose independent rect. 2 1
13 308.60 wind 9.0 30 < th dose dependent rect. 2 1
15 308.62 temperature 10.0 30 > th dose independent rect. 2 1
18 308.62 humidity 50.0 30 > th dose independent rect. 2 1
21 308.62 atmosphere 995.0 30 > th dose independent rect. 2 1
22 308.62 atmosphere 1010.0 30 < th dose independent rect. 2 1
24 308.62 radiation 1.0 30 < th dose independent rect. 2 1
29 308.62 precipitation 0.1 30 < th dose independent rect. 2 1
30 308.62 temperature 10.0 30 > th dose independent rect. 3 23
31 308.62 radiation 1.0 30 < th dose dependent rect. 2 1
36 308.62 precipitation 0.1 30 < th dose dependent rect. 2 1
42 308.73 temperature 30.0 30 < th dose dependent rect. 2 1
46 308.86 temperature 10.0 30 > th dose dependent rect. 2 1
49 309.09 atmosphere 995.0 30 > th dose dependent rect. 2 1
57 309.40 wind 1.0 30 > th dose independent rect. 2 1
100 311.62 radiation 1.0 4320 < th dose dependent rect. 3 1
115 312.55 wind 9.0 1440 < th dose independent rect. 3 1
116 312.55 temperature 10.0 1440 > th dose independent rect. 3 1
119 312.55 temperature 30.0 1440 < th dose independent rect. 3 1
123 312.55 humidity 50.0 1440 > th dose independent rect. 3 1
132 312.55 atmosphere 995.0 1440 > th dose independent rect. 3 1
133 312.55 radiation 1.0 1440 < th dose independent rect. 3 1
153 312.55 temperature 10.0 1440 > th dose independent rect. 4 23
161 312.56 atmosphere 995.0 30 > th dose independent rect. 3 23
177 319.64 precipitation 0.1 30 < th dose independent rect. 3 23
178 319.64 precipitation 0.1 30 < th dose dependent rect. 3 23
179 319.80 wind 9.0 30 < th dose independent rect. 3 23
188 323.98 humidity 50.0 30 > th dose independent rect. 3 23
189 324.24 temperature 30.0 30 < th dose independent rect. 3 23
190 324.44 wind 1.0 30 < th dose independent rect. 13 15
205 329.06 wind 1.0 30 < th dose dependent rect. 13 15
211 329.50 humidity 90.0 10 > th dose independent rect. 23 4
230 331.19 temperature 10.0 30 > th dose dependent rect. 3 23
238 332.20 wind 3.0 90 < th dose dependent rect. 13 1
242 332.48 wind 1.0 30 < th dose independent rect. 23 5
278 334.49 humidity 90.0 10 > th dose independent rect. 20 7
287 334.83 humidity 80.0 90 > th dose dependent rect. 23 4
302 335.53 wind 1.0 30 < th dose independent rect. 12 2
323 336.32 wind 1.0 10 < th dose independent rect. 14 4
329 336.43 wind 1.0 10 < th dose dependent rect. 14 4
385 337.29 temperature 20.0 10 < th dose dependent rect. 22 1
392 337.34 temperature 25.0 270 > th dose independent rect. 23 4
399 337.45 wind 5.0 10 > th dose dependent rect. 20 2
418 337.76 wind 5.0 10 > th dose independent rect. 20 3
445 337.98 wind 1.0 90 < th dose independent sin 18 NA
463 338.18 wind 7.0 270 > th dose dependent rect. 19 1
466 338.22 wind 1.0 90 < th dose independent rect. 12 9
536 338.74 wind 1.0 30 > th dose independent rect. 3 23
549 338.90 temperature 25.0 270 > th dose dependent rect. 23 4
570 339.15 temperature 25.0 270 > th dose dependent rect. 23 7
572 339.16 humidity 80.0 10 < th dose dependent rect. 22 1
575 339.17 atmosphere 1015.0 30 < th dose independent rect. 3 23
601 339.50 humidity 90.0 10 > th dose independent rect. 9 18
711 340.13 temperature 25.0 720 < th dose independent rect. 7 13
782 340.55 temperature 20.0 10 < th dose dependent rect. 11 12
803 340.67 temperature 20.0 10 < th dose dependent rect. 15 8
812 340.80 temperature 20.0 10 < th dose dependent rect. 19 4
819 340.84 temperature 20.0 10 < th dose independent rect. 20 2
823 340.88 wind 1.0 30 < th dose independent rect. 10 5
851 341.00 humidity 80.0 10 < th dose independent rect. 21 1
907 341.31 wind 1.0 10 > th dose independent sin 18 NA
942 341.67 temperature 25.0 720 < th dose independent sin 22 NA
961 341.76 temperature 30.0 720 < th dose dependent rect. 7 13
963 341.79 humidity 70.0 90 > th dose independent rect. 12 1
968 341.80 temperature 20.0 90 < th dose independent rect. 10 12
970 341.80 humidity 80.0 30 > th dose dependent rect. 15 12
986 341.88 wind 1.0 30 < th dose dependent sin 18 NA
990 341.88 temperature 10.0 270 > th dose dependent rect. 3 19