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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0371700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.04 (0.0557) R2 : 0.367
β1 : 1.57 (0.205) R2dD : 0.0775 R2D : 0.0236
β2 : 0.998 (0.143) R2dC : 0.0613 R2C : 0.0452
β3 : -1.6 (0.161) R2dE : 0.211 R2E : 0.152
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.804 (0.119) R2dN8 : 0.0955 R2N8 : 0.0456
σ : 1.04
deviance : 499.27
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_____
C
peak time of C : 4.25
E
wheather : humidity
threshold : 69.84
memory length : 2869
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.3
open length of G : 1.85

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
504.05 1.05 3.99 1.68 0.937 -1.52 -1.1 -0.592 0.818 4.64 70 1442 11 1.87
505.26 1.05 3.99 1.73 0.931 -1.57 -1.14 -- 0.816 4.72 69.96 1444 11.1 1.85
506.88 1.05 3.99 1.69 0.933 -1.53 -- -0.604 0.82 4.44 69.98 1444 11.1 1.85
499.27 1.04 4.04 1.57 0.998 -1.6 -- -- 0.804 4.25 69.84 2869 11.3 1.85
523.15 1.07 3.98 1.68 -- -2.15 -- 0.739 1.04 -- 69.18 2150 11.3 2.17
657.58 1.2 3.99 1.34 0.861 -- -1.22 -- 0.81 4.51 -- -- -- --
661.36 1.2 3.98 1.35 0.851 -- -- -- 0.817 4.25 -- -- -- --
525.08 1.07 3.96 1.58 -- -2.14 -- -- 1.01 -- 69.2 2150 11.3 2.13
553.19 1.1 4 -- 0.958 -1.8 -- -- 0.79 3.9 69 2866 11.4 1.88
700.45 1.24 3.99 1.38 -- -- -- -- 0.839 -- -- -- -- --
709.09 1.25 4.02 -- 0.877 -- -- -- 0.667 4.22 -- -- -- --
591.08 1.13 3.98 -- -- -2.02 -- -- 0.882 -- 69.42 2147 11.5 1.97
750.66 1.28 4.02 -- -- -- -- -- 0.686 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 498.94 wind 1.0 43200 > th dose dependent rect. 21 9
2 500.38 wind 9.0 43200 < th dose dependent rect. 21 9
5 502.37 wind 9.0 43200 < th dose dependent rect. 23 7
8 502.74 wind 1.0 43200 > th dose dependent rect. 21 12
22 505.18 humidity 70.0 1440 < th dose independent rect. 11 2
24 505.31 wind 9.0 43200 < th dose dependent rect. 21 12
32 505.99 wind 9.0 43200 < th dose dependent rect. 23 10
123 509.47 wind 1.0 43200 > th dose dependent rect. 3 3
178 511.59 wind 3.0 43200 > th dose dependent sin 8 NA
226 513.04 precipitation 0.1 43200 > th dose dependent rect. 16 1
230 513.14 wind 3.0 43200 > th dose dependent rect. 5 4
256 514.19 precipitation 0.1 43200 > th dose independent rect. 16 1
274 514.74 wind 1.0 43200 < th dose dependent rect. 1 5
294 515.34 wind 9.0 43200 < th dose dependent sin 8 NA
297 515.38 precipitation 0.1 43200 < th dose independent rect. 16 1
298 515.38 precipitation 0.1 43200 < th dose dependent rect. 16 1
338 516.76 humidity 70.0 1440 < th dose independent rect. 10 7
344 517.00 wind 3.0 43200 > th dose independent rect. 4 2
353 517.36 wind 3.0 43200 > th dose independent rect. 22 11
366 517.76 wind 3.0 43200 > th dose independent rect. 22 8
397 518.83 humidity 70.0 1440 < th dose independent rect. 10 21
398 518.91 humidity 70.0 1440 < th dose independent rect. 10 10
436 519.58 wind 1.0 43200 < th dose dependent rect. 5 1
438 519.63 wind 9.0 43200 < th dose independent rect. 12 1
441 519.76 wind 9.0 14400 > th dose dependent rect. 6 5
455 520.18 wind 3.0 43200 < th dose independent rect. 4 2
460 520.35 wind 3.0 43200 > th dose independent rect. 24 6
467 520.61 wind 3.0 43200 < th dose independent rect. 22 11
474 520.91 wind 3.0 43200 < th dose independent rect. 22 8
487 521.41 wind 3.0 43200 > th dose independent rect. 3 6
521 522.04 humidity 70.0 1440 < th dose independent sin 21 NA
524 522.08 humidity 70.0 1440 < th dose independent rect. 19 22
534 522.43 humidity 70.0 1440 > th dose independent rect. 11 2
535 522.49 humidity 70.0 14400 < th dose independent rect. 11 1
549 522.81 wind 5.0 43200 < th dose independent rect. 3 10
559 523.03 radiation 30.0 1440 > th dose dependent rect. 12 3
564 523.10 radiation 30.0 1440 > th dose dependent rect. 12 5
582 523.18 wind 3.0 43200 < th dose independent rect. 24 6
595 523.40 wind 7.0 43200 > th dose independent rect. 12 1
606 523.63 temperature 30.0 14400 < th dose independent rect. 11 1
630 523.95 temperature 30.0 14400 > th dose independent rect. 11 1
631 523.96 wind 3.0 43200 < th dose independent rect. 3 6
656 524.55 wind 3.0 43200 > th dose dependent rect. 10 2
712 525.16 humidity 70.0 1440 < th dose independent rect. 15 23
717 525.23 wind 9.0 43200 < th dose independent rect. 10 3
720 525.28 wind 9.0 14400 > th dose dependent rect. 9 2
723 525.35 humidity 70.0 1440 < th dose independent no NA NA
796 525.42 wind 7.0 43200 > th dose dependent rect. 12 1
801 525.49 wind 5.0 43200 < th dose independent rect. 9 2
815 525.55 wind 5.0 43200 < th dose independent rect. 18 19
822 525.68 humidity 70.0 1440 > th dose independent rect. 10 21
823 525.69 wind 3.0 43200 > th dose independent rect. 7 2
826 525.74 humidity 70.0 1440 > th dose independent rect. 10 19
838 525.77 humidity 70.0 1440 > th dose independent rect. 10 10
841 525.79 humidity 70.0 1440 > th dose independent rect. 10 12
879 526.28 wind 1.0 43200 < th dose dependent rect. 1 9
886 526.43 wind 5.0 43200 < th dose independent rect. 21 16
908 526.54 precipitation 0.1 43200 > th dose independent rect. 15 5
914 526.65 radiation 30.0 1440 > th dose dependent sin 14 NA
940 526.82 wind 7.0 43200 > th dose independent rect. 10 3
945 526.90 wind 5.0 43200 > th dose independent rect. 18 19
955 527.08 precipitation 0.1 43200 < th dose independent rect. 15 5
956 527.08 precipitation 0.1 43200 < th dose dependent rect. 15 5
961 527.14 wind 5.0 43200 < th dose independent sin 6 NA
966 527.20 radiation 40.0 1440 > th dose independent rect. 12 21
972 527.26 radiation 40.0 1440 > th dose independent rect. 12 3
990 527.37 precipitation 0.1 43200 > th dose dependent rect. 19 3
1000 527.49 humidity 60.0 1440 > th dose dependent rect. 3 20