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Os04g0370900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0681) R2 : 0.766
β1 : 1.7 (0.27) R2dD : 0.0401 R2D : 0.142
β2 : 2 (0.133) R2dC : 0.117 R2C : 0.15
β3 : 2.37 (0.316) R2dE : 0.0997 R2E : 0.366
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.32 (0.9) R2dD*E : 0.0687 R2D*E : 0.269
γ1 : 1.45 (0.135) R2dN8 : 0.111 R2N8 : 0.158
σ : 1
deviance : 460.7
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C
peak time of C : 2.9
E
wheather : temperature
threshold : 20
memory length : 4365
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19
open length of G : 3.85

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
459.92 1.01 11.4 1.68 2 2.33 -0.541 -5.23 1.44 2.95 20 4357 19 4
495.35 1.04 11.3 1.89 2.12 3.91 0.0855 -- 1.56 3.07 19.96 4396 18.9 4.4
460.7 1 11.4 1.7 2 2.37 -- -5.32 1.45 2.9 20 4365 19 3.85
476.1 1.02 11.3 1.86 2.01 4.23 -- -- 1.54 3.17 19.91 4404 17.4 5.95
554.38 1.1 11.5 1.57 -- 3.46 -- -4.79 1.51 -- 19.9 3618 17.7 6.03
721.18 1.26 11 4.69 2.17 -- -1.37 -- 2.6 3.03 -- -- -- --
726.8 1.26 11 4.72 2.16 -- -- -- 2.61 2.84 -- -- -- --
536.81 1.08 11.3 1.89 -- 5.17 -- -- 1.62 -- 19 3604 17.7 5.97
520.85 1.06 11.3 -- 2.03 5.61 -- -- 1.13 3.56 20 4438 17.4 5.82
995.74 1.47 11 4.81 -- -- -- -- 2.67 -- -- -- -- --
1312.8 1.69 11.1 -- 2.25 -- -- -- 2.09 2.86 -- -- -- --
598.94 1.14 11.3 -- -- 6.14 -- -- 1.44 -- 19.04 3566 17.9 6.72
1605.35 1.87 11.1 -- -- -- -- -- 2.13 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 461.14 temperature 20 4320 > th dose independent rect. 19 4
2 462.22 temperature 20 4320 > th dose independent rect. 18 6
7 463.46 temperature 20 4320 < th dose independent rect. 18 6
9 464.85 temperature 20 4320 < th dose independent rect. 19 4
71 476.81 temperature 20 4320 > th dose independent sin 14 NA
86 478.33 temperature 20 4320 < th dose independent sin 14 NA
88 478.74 temperature 20 1440 > th dose independent rect. 3 2
93 478.84 temperature 20 1440 < th dose independent rect. 3 2
243 489.13 temperature 25 4320 < th dose dependent rect. 20 1
249 489.36 temperature 15 4320 > th dose dependent rect. 20 1
335 493.17 temperature 20 4320 < th dose dependent rect. 22 1
377 494.72 temperature 25 4320 < th dose dependent rect. 19 8
410 495.56 humidity 60 43200 < th dose dependent rect. 19 14
428 495.99 temperature 15 4320 > th dose dependent rect. 19 9
436 496.17 humidity 60 43200 < th dose independent rect. 19 14
521 497.56 humidity 60 43200 > th dose independent rect. 19 14
550 498.07 humidity 60 43200 > th dose independent rect. 19 12
571 498.51 humidity 60 43200 < th dose independent rect. 19 12
576 498.59 temperature 15 4320 > th dose dependent rect. 3 1
595 498.82 temperature 20 4320 < th dose dependent rect. 1 3
597 498.84 temperature 20 4320 > th dose independent no NA NA
623 499.20 temperature 20 4320 < th dose independent no NA NA
666 499.70 temperature 20 4320 < th dose dependent rect. 3 1
669 499.71 temperature 20 4320 > th dose independent rect. 5 23
687 499.96 temperature 20 4320 > th dose independent rect. 1 23
703 500.11 temperature 20 4320 < th dose independent rect. 5 23
719 500.30 temperature 25 4320 < th dose dependent sin 12 NA
721 500.32 temperature 20 4320 < th dose independent rect. 1 23
809 501.04 temperature 20 4320 < th dose independent rect. 21 23
813 501.08 temperature 20 4320 > th dose independent rect. 21 23
909 502.01 temperature 30 4320 < th dose dependent rect. 3 1