FiT-DB / Search/ Help/ Sample detail

Os04g0369100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.57 (0.0587) R2 : 0.786
β1 : 8.08 (0.206) R2dD : 0.75 R2D : 0.696
β2 : 0.973 (0.16) R2dC : 0.0212 R2C : -0.0305
β3 : -3.08 (0.28) R2dE : 0.091 R2E : 0.028
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.73 (1.05) R2dD*E : 0.0113 R2D*E : -0.01
γ1 : 1.2 (0.137) R2dN8 : 0.0635 R2N8 : -0.0883
σ : 1.05
deviance : 506.79
__
_____
C
peak time of C : 8.51
E
wheather : atmosphere
threshold : 1006
memory length : 320
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.7
open length of G : 7.43

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
500.52 1.05 7.55 8.12 0.985 -3.09 -1.58 6.18 1.24 8.56 1006 317 23.7 7.47
532.65 1.07 7.53 8.04 0.936 -3.26 -0.0872 -- 1.27 8.34 1007 321 23.7 7.4
506.79 1.05 7.57 8.08 0.973 -3.08 -- 5.73 1.2 8.51 1006 320 23.7 7.43
531.63 1.07 7.52 7.98 0.913 -3.33 -- -- 1.22 8.53 1007 322 23.6 7.39
523.26 1.07 7.45 8.3 -- -2.67 -- 7.38 1.41 -- 1007 302 23.8 5.77
660.93 1.21 7.73 8 0.429 -- -1.1 -- 0.416 15.5 -- -- -- --
664 1.21 7.74 7.98 0.427 -- -- -- 0.409 14.5 -- -- -- --
550.93 1.09 7.61 8.04 -- -2.75 -- -- 1.08 -- 1007 312 23.8 5.55
1151.99 1.58 8.2 -- 0.532 -6.8 -- -- -1.4 13.6 997.7 47520 20.9 4.82
674.72 1.21 7.74 7.97 -- -- -- -- 0.399 -- -- -- -- --
2344.2 2.26 7.94 -- 0.274 -- -- -- -0.48 14.1 -- -- -- --
1086.66 1.54 8.24 -- -- -6.67 -- -- -1.8 -- 997.8 47520 3.47 4.32
2348.71 2.26 7.94 -- -- -- -- -- -0.485 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 527.70 atmosphere 1005 270 > th dose dependent rect. 24 8
9 552.95 temperature 25 720 > th dose dependent rect. 9 1
13 555.06 temperature 25 720 > th dose dependent rect. 7 5
14 555.12 temperature 25 720 > th dose dependent rect. 5 7
50 559.29 temperature 25 720 > th dose dependent sin 6 NA
82 564.14 atmosphere 1005 10 > th dose dependent rect. 24 9
96 566.39 temperature 30 720 > th dose independent rect. 11 3
110 570.29 atmosphere 1005 720 > th dose dependent rect. 21 6
113 571.15 atmosphere 1010 720 < th dose dependent rect. 20 8
116 571.59 temperature 30 720 > th dose independent rect. 13 1
141 575.41 temperature 30 720 < th dose independent rect. 6 8
187 577.69 temperature 25 10 > th dose independent rect. 1 6
198 578.59 atmosphere 1005 720 > th dose dependent rect. 23 2
218 580.16 temperature 25 10 > th dose independent rect. 4 3
223 580.34 atmosphere 1010 720 < th dose dependent rect. 23 2
225 580.50 atmosphere 1005 10 > th dose dependent sin 5 NA
234 581.04 temperature 25 270 > th dose dependent rect. 16 23
238 581.21 temperature 25 720 < th dose independent rect. 6 5
242 581.36 wind 7 43200 > th dose independent rect. 18 2
285 583.79 temperature 25 720 > th dose independent rect. 21 1
288 583.90 atmosphere 1005 270 > th dose dependent rect. 4 1
325 585.34 wind 7 43200 < th dose independent rect. 18 2
326 585.42 temperature 25 270 > th dose dependent rect. 7 16
328 585.53 atmosphere 1010 30 < th dose dependent sin 6 NA
330 585.53 temperature 25 270 > th dose dependent rect. 9 14
367 586.29 atmosphere 1010 270 < th dose dependent rect. 22 11
396 587.05 atmosphere 1005 10 > th dose dependent rect. 4 8
420 587.99 temperature 25 270 > th dose dependent rect. 9 23
444 588.38 temperature 25 270 > th dose dependent rect. 7 23
453 588.51 temperature 25 270 > th dose dependent no NA NA
479 588.88 temperature 25 720 < th dose independent rect. 7 2
524 589.94 temperature 30 720 < th dose dependent rect. 6 8
552 590.72 atmosphere 1005 10 > th dose dependent rect. 24 14
560 591.00 wind 7 43200 > th dose dependent rect. 18 2
579 591.33 wind 1 14400 < th dose dependent rect. 24 4
587 591.73 atmosphere 1000 14400 < th dose independent rect. 18 1
624 592.33 temperature 10 720 > th dose dependent rect. 7 8
636 592.57 atmosphere 1000 14400 > th dose independent rect. 18 1
644 592.73 temperature 25 270 > th dose dependent sin 22 NA
659 593.05 temperature 20 30 > th dose dependent rect. 9 12
665 593.20 radiation 40 720 > th dose independent rect. 11 23
708 593.73 temperature 30 720 < th dose independent sin 6 NA
733 594.18 temperature 25 90 > th dose dependent sin 18 NA
779 594.85 temperature 20 30 > th dose dependent rect. 7 14
808 595.30 atmosphere 1010 30 < th dose dependent rect. 3 10
810 595.31 radiation 40 720 > th dose independent rect. 11 3
814 595.33 wind 9 43200 > th dose dependent rect. 16 4
827 595.51 atmosphere 1005 720 > th dose dependent sin 12 NA
873 596.11 radiation 40 720 > th dose independent rect. 9 5
875 596.16 atmosphere 1005 10 > th dose dependent rect. 24 16
880 596.24 temperature 20 30 > th dose dependent rect. 7 17
898 596.58 temperature 25 270 > th dose independent rect. 24 7
899 596.60 atmosphere 1010 720 < th dose dependent sin 12 NA
978 597.44 wind 9 43200 < th dose independent rect. 16 7
984 597.50 temperature 30 720 < th dose independent rect. 21 17