Os04g0368800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EGF domain containing protein.
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Os04g0368800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EGF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 404.76 | 0.945 | 7.65 | -1.63 | 1.37 | 2.5 | 1.21 | -5.07 | -0.3 | 1.35 | 20.6 | 3982 | -- | -- |
| 440.94 | 0.978 | 7.49 | -1.08 | 1.45 | 3.58 | 1.08 | -- | -0.26 | 1.59 | 20.79 | 5187 | -- | -- |
| 410.42 | 0.944 | 7.65 | -1.65 | 1.37 | 2.51 | -- | -4.86 | -0.306 | 1.21 | 20.74 | 3999 | -- | -- |
| 420.27 | 0.955 | 7.48 | -2 | 1.4 | 4.34 | -- | -- | -0.284 | 1.03 | 19.3 | 9598 | -- | -- |
| 524.27 | 1.07 | 7.64 | -1.69 | -- | 2.74 | -- | -4.78 | -0.325 | -- | 20.6 | 3903 | -- | -- |
| 657.48 | 1.2 | 7.23 | 1.3 | 1.5 | -- | 0.879 | -- | 0.893 | 1.32 | -- | -- | -- | -- |
| 660.6 | 1.2 | 7.23 | 1.27 | 1.5 | -- | -- | -- | 0.889 | 1.26 | -- | -- | -- | -- |
| 533.67 | 1.08 | 7.46 | -1.89 | -- | 4.59 | -- | -- | -0.191 | -- | 18.8 | 9685 | -- | -- |
| 453.57 | 0.992 | 7.4 | -- | 1.38 | 3.37 | -- | -- | 0.214 | 1.15 | 18.7 | 8044 | -- | -- |
| 799.37 | 1.32 | 7.21 | 1.33 | -- | -- | -- | -- | 0.919 | -- | -- | -- | -- | -- |
| 702.95 | 1.24 | 7.26 | -- | 1.52 | -- | -- | -- | 0.748 | 1.29 | -- | -- | -- | -- |
| 576.58 | 1.12 | 7.37 | -- | -- | 3.43 | -- | -- | 0.224 | -- | 18.71 | 8107 | -- | -- |
| 845.73 | 1.36 | 7.24 | -- | -- | -- | -- | -- | 0.772 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 368.27 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 372.22 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 374.59 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 13 | 380.98 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 28 | 384.31 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 38 | 385.66 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 40 | 385.93 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 42 | 386.05 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 57 | 387.69 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 69 | 389.11 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 76 | 389.72 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 13 |
| 85 | 390.22 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 9 |
| 127 | 391.64 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 143 | 391.98 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 22 |
| 153 | 392.13 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 154 | 392.20 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 172 | 393.14 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 178 | 393.25 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 182 | 393.33 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 197 | 393.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 198 | 393.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 209 | 394.01 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 215 | 394.16 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 218 | 394.24 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 220 | 394.31 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 222 | 394.36 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 246 | 395.23 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 249 | 395.41 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 13 |
| 255 | 395.45 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 1 | 11 |
| 258 | 395.46 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 259 | 395.46 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 326 | 396.05 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 328 | 396.05 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 332 | 396.08 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 351 | 396.25 | wind | 3.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 375 | 396.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 382 | 396.72 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 384 | 396.76 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 393 | 396.84 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 401 | 396.89 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 407 | 396.93 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 429 | 397.17 | radiation | 1.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 436 | 397.34 | radiation | 1.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 491 | 398.05 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 519 | 398.63 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 527 | 398.75 | wind | 3.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 536 | 398.81 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 563 | 399.03 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 595 | 399.34 | atmosphere | 1005.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 626 | 399.64 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 627 | 399.64 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 632 | 399.71 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 635 | 399.75 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 645 | 399.86 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 650 | 399.89 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 797 | 401.37 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 798 | 401.37 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 888 | 402.18 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 911 | 402.35 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 967 | 402.73 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 21 |
| 969 | 402.73 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 972 | 402.75 | radiation | 1.0 | 14400 | < th | dose dependent | no | NA | NA |