Os04g0368000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EGF domain containing protein.
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Os04g0368000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EGF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 220.94 | 0.698 | 8.06 | 0.496 | 2.52 | 3.84 | 1.12 | -7.57 | 1.11 | 5.86 | 18.84 | 3357 | -- | -- |
| 242.11 | 0.725 | 7.9 | 1.51 | 2.38 | 4.65 | 1.44 | -- | 1.06 | 5.86 | 13.21 | 9760 | -- | -- |
| 223.64 | 0.696 | 8.04 | 0.646 | 2.52 | 3.93 | -- | -6.98 | 1.14 | 5.8 | 17.67 | 3337 | -- | -- |
| 243.56 | 0.727 | 7.93 | 1.51 | 2.37 | 4.63 | -- | -- | 1.02 | 5.72 | 10.6 | 9952 | -- | -- |
| 519.17 | 1.06 | 8.07 | 0.74 | -- | 4.07 | -- | -6.1 | 1.24 | -- | 17.15 | 4134 | -- | -- |
| 594.81 | 1.14 | 7.6 | 4.17 | 2.5 | -- | 1.06 | -- | 2.49 | 5.5 | -- | -- | -- | -- |
| 597.55 | 1.14 | 7.6 | 4.17 | 2.51 | -- | -- | -- | 2.48 | 5.46 | -- | -- | -- | -- |
| 535.06 | 1.08 | 7.98 | 1.45 | -- | 4.83 | -- | -- | 1.02 | -- | 1.465 | 9955 | -- | -- |
| 253 | 0.741 | 7.99 | -- | 2.42 | 4.67 | -- | -- | 0.723 | 5.69 | 5.675 | 24320 | -- | -- |
| 924.26 | 1.42 | 7.63 | 4.25 | -- | -- | -- | -- | 2.54 | -- | -- | -- | -- | -- |
| 1055.78 | 1.52 | 7.7 | -- | 2.57 | -- | -- | -- | 2.02 | 5.39 | -- | -- | -- | -- |
| 557.01 | 1.1 | 8.04 | -- | -- | 4.78 | -- | -- | 0.739 | -- | 5.503 | 24328 | -- | -- |
| 1401.43 | 1.75 | 7.74 | -- | -- | -- | -- | -- | 2.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.04 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 195.94 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 16 | 196.05 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 18 | 196.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 23 | 198.42 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 24 | 199.28 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 27 | 199.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 29 | 199.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 57 | 202.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 59 | 203.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 79 | 204.76 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 80 | 204.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 97 | 206.58 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 12 |
| 103 | 206.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 116 | 206.73 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 119 | 206.91 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 120 | 206.93 | radiation | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 148 | 207.68 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 154 | 207.91 | temperature | 20 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 180 | 208.39 | radiation | 1 | 43200 | < th | dose dependent | sin | 13 | NA |
| 203 | 208.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 226 | 208.98 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 228 | 209.03 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 16 |
| 233 | 209.06 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 237 | 209.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 14 |
| 281 | 209.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 22 |
| 296 | 209.67 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 314 | 209.77 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 15 |
| 320 | 209.79 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 386 | 210.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 23 |
| 387 | 210.26 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 392 | 210.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 472 | 210.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 551 | 211.47 | radiation | 1 | 43200 | < th | dose independent | sin | 13 | NA |
| 639 | 212.25 | temperature | 20 | 43200 | < th | dose dependent | sin | 10 | NA |
| 644 | 212.30 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 678 | 212.57 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 22 |
| 689 | 212.66 | radiation | 1 | 43200 | > th | dose independent | sin | 13 | NA |
| 696 | 212.73 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 14 |
| 698 | 212.74 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 704 | 212.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 734 | 212.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 793 | 212.94 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 811 | 213.06 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 22 |
| 832 | 213.19 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 870 | 213.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 1 |