Os04g0367100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0367100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.18 | 0.502 | 7.08 | -2.42 | 0.141 | -0.621 | 0.776 | -3.07 | 0.611 | 0.642 | 67.8 | 4097 | -- | -- |
| 122.43 | 0.515 | 7.08 | -2.31 | 0.204 | -0.807 | 0.614 | -- | 0.595 | 23.9 | 67 | 2474 | -- | -- |
| 115.57 | 0.501 | 7.08 | -2.47 | 0.0729 | -0.618 | -- | -3.2 | 0.613 | 0.108 | 67.25 | 4613 | -- | -- |
| 123.8 | 0.518 | 7.08 | -2.31 | 0.207 | -0.795 | -- | -- | 0.601 | 0.768 | 67.01 | 2476 | -- | -- |
| 115.84 | 0.501 | 7.07 | -2.46 | -- | -0.614 | -- | -3.24 | 0.626 | -- | 67.05 | 4608 | -- | -- |
| 140.67 | 0.556 | 7.07 | -2.38 | 0.0634 | -- | 0.502 | -- | 0.646 | 0.419 | -- | -- | -- | -- |
| 141.44 | 0.557 | 7.07 | -2.4 | 0.101 | -- | -- | -- | 0.642 | 3.81 | -- | -- | -- | -- |
| 126.55 | 0.524 | 7.08 | -2.31 | -- | -0.719 | -- | -- | 0.599 | -- | 67.16 | 2477 | -- | -- |
| 261.18 | 0.753 | 7.04 | -- | 0.289 | -0.993 | -- | -- | 0.837 | 0.0358 | 68.51 | 2429 | -- | -- |
| 142 | 0.557 | 7.07 | -2.4 | -- | -- | -- | -- | 0.644 | -- | -- | -- | -- | -- |
| 293.57 | 0.801 | 7.01 | -- | 0.0542 | -- | -- | -- | 0.909 | 4.3 | -- | -- | -- | -- |
| 263.82 | 0.756 | 7.02 | -- | -- | -1.02 | -- | -- | 0.889 | -- | 68 | 1799 | -- | -- |
| 293.73 | 0.8 | 7.01 | -- | -- | -- | -- | -- | 0.911 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 106.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 3 | 106.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 107.64 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 6 | 108.43 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 10 | 108.71 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 12 | 108.83 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 23 | 109.43 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 10 |
| 32 | 109.56 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 37 | 109.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 38 | 109.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 47 | 109.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 48 | 109.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 60 | 110.01 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 68 | 110.11 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 71 | 110.14 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 72 | 110.14 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 121 | 110.70 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 122 | 110.70 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 127 | 110.73 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 131 | 110.77 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 134 | 110.79 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 4 |
| 137 | 110.80 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 151 | 110.89 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 169 | 111.04 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 14 |
| 171 | 111.04 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 14 |
| 185 | 111.13 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 190 | 111.15 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 194 | 111.16 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 210 | 111.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 214 | 111.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 217 | 111.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 231 | 111.35 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 235 | 111.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 237 | 111.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 268 | 111.55 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 325 | 111.92 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 329 | 111.94 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 330 | 111.94 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 343 | 112.01 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 372 | 112.18 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 401 | 112.32 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 406 | 112.35 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 426 | 112.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 427 | 112.48 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 448 | 112.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 449 | 112.58 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 452 | 112.58 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 474 | 112.72 | humidity | 80.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 488 | 112.76 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 5 |
| 490 | 112.77 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 509 | 112.85 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 531 | 112.92 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 5 |
| 533 | 112.92 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 534 | 112.93 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 555 | 113.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 560 | 113.04 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 14 |
| 564 | 113.06 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 574 | 113.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 9 |
| 627 | 113.31 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 699 | 113.56 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 8 | 9 |
| 707 | 113.59 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 709 | 113.60 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 711 | 113.61 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 778 | 113.84 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 824 | 113.98 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 904 | 114.18 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 908 | 114.19 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 2 | NA |
| 909 | 114.19 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 2 | NA |
| 912 | 114.19 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 2 | NA |
| 936 | 114.25 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 960 | 114.29 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 997 | 114.41 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 2 |