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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0366000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EGF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.99 (0.0621) R2 : 0.701
β1 : -2.11 (0.258) R2dD : 0.0948 R2D : -0.0553
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.56 (0.172) R2dE : 0.0847 R2E : 0.0502
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.83 (0.687) R2dD*E : 0.0453 R2D*E : -0.0215
γ1 : 2.48 (0.122) R2dN8 : 0.497 R2N8 : 0.577
σ : 0.92
deviance : 390
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.81
memory length : 5219
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 0.65

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
378.76 0.914 4.01 -2.11 0.577 1.36 -0.0153 -3.87 2.53 17.7 25.79 5342 11 0.883
408.76 0.942 3.86 -1.49 0.679 1.73 -0.294 -- 2.67 18 24.99 6762 11.5 0.338
378.49 0.906 4.01 -2.1 0.566 1.37 -- -3.84 2.52 17.7 25.76 5340 11 0.85
407.19 0.94 3.86 -1.47 0.675 1.73 -- -- 2.68 17.3 24.9 6758 11.5 0.341
390 0.92 3.99 -2.11 -- 1.56 -- -3.83 2.48 -- 25.81 5219 11 0.65
477.09 1.02 3.73 -0.124 0.768 -- -0.215 -- 3.15 18.2 -- -- -- --
477.21 1.02 3.73 -0.122 0.767 -- -- -- 3.15 18.2 -- -- -- --
416.31 0.95 3.84 -1.25 -- 1.72 -- -- 2.84 -- 25.71 5244 11 0.65
438.02 0.975 3.8 -- 0.673 1.08 -- -- 2.95 17.5 24.9 6730 11.5 0.8
507.72 1.05 3.71 -0.143 -- -- -- -- 3.13 -- -- -- -- --
477.6 1.02 3.72 -- 0.769 -- -- -- 3.16 18.2 -- -- -- --
446.86 0.985 3.77 -- -- 1.38 -- -- 2.76 -- 26.48 4983 12.3 0.828
508.26 1.05 3.71 -- -- -- -- -- 3.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 366.22 radiation 10 43200 > th dose independent rect. 16 17
3 368.19 radiation 10 43200 > th dose independent sin 11 NA
4 368.28 radiation 10 43200 > th dose independent rect. 17 14
10 369.73 radiation 40 43200 > th dose independent rect. 13 1
11 370.36 radiation 20 43200 > th dose independent rect. 9 23
12 370.52 radiation 20 43200 > th dose independent sin 21 NA
16 370.65 radiation 20 43200 > th dose independent rect. 8 9
62 370.80 radiation 20 43200 > th dose independent no NA NA
147 370.80 radiation 20 43200 > th dose independent rect. 15 23
156 370.85 radiation 20 43200 > th dose independent rect. 12 23
157 370.89 radiation 10 43200 > th dose independent rect. 6 1
195 371.33 radiation 20 43200 < th dose dependent rect. 8 2
199 371.48 radiation 20 43200 > th dose independent rect. 12 4
200 371.50 radiation 20 43200 < th dose dependent rect. 7 4
221 371.64 radiation 20 43200 < th dose dependent rect. 7 10
304 372.35 radiation 20 43200 < th dose dependent rect. 7 17
305 372.35 radiation 20 43200 < th dose dependent rect. 7 20
363 372.59 radiation 20 43200 < th dose dependent sin 1 NA
376 372.75 radiation 20 43200 < th dose dependent rect. 2 14
380 372.75 radiation 20 43200 < th dose dependent rect. 21 19
399 372.91 radiation 40 43200 > th dose independent sin 14 NA
515 373.64 radiation 20 43200 > th dose independent rect. 13 2
636 373.99 radiation 20 43200 < th dose dependent no NA NA
662 374.02 radiation 1 43200 < th dose dependent rect. 19 10
681 374.15 radiation 1 43200 < th dose dependent rect. 22 7
682 374.16 radiation 1 43200 < th dose dependent rect. 3 2
711 374.27 radiation 1 43200 < th dose dependent rect. 24 5
713 374.27 radiation 20 43200 < th dose dependent rect. 13 23
813 374.87 radiation 20 43200 < th dose dependent rect. 10 23
936 375.42 radiation 10 43200 < th dose independent rect. 9 2
994 375.81 wind 9 43200 > th dose dependent rect. 16 1