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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0362300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0418) R2 : 2.13e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00867 (0.088) R2dN8 : 2.75e-05 R2N8 : 2.13e-05
σ : 0.787
deviance : 284.49
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
273.25 0.777 3.01 -0.0605 0.0293 -0.34 0.272 3.49 -0.0114 13.1 1.101 26 -- --
280.93 0.787 2.98 0.179 0.139 0.163 -0.638 -- 0.00231 3.52 2.8 10 -- --
273.54 0.77 3.01 -0.0531 0.0321 -0.351 -- 3.63 -0.00887 13.4 1.148 25 -- --
281.61 0.787 2.97 0.187 0.153 0.187 -- -- 0.0324 4.46 3.5 10 -- --
273.59 0.77 3.02 -0.0546 -- -0.33 -- 3.6 -0.0121 -- 1.155 25 -- --
282.72 0.788 2.98 0.11 0.000543 -- -0.587 -- 0.0195 1.9 -- -- -- --
284.03 0.789 2.97 0.128 0.0212 -- -- -- 0.0226 7.6 -- -- -- --
282.48 0.786 2.97 0.172 -- 0.126 -- -- 0.032 -- 3.5 10 -- --
282.5 0.787 2.97 -- 0.14 0.165 -- -- 0.0112 4.48 3.5 10 -- --
284.05 0.788 2.97 0.128 -- -- -- -- 0.0229 -- -- -- -- --
284.46 0.789 2.98 -- 0.0224 -- -- -- 0.00833 7.21 -- -- -- --
283.24 0.786 2.98 -- -- 0.11 -- -- 0.0124 -- 3.5 10 -- --
284.49 0.787 2.98 -- -- -- -- -- 0.00867 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.62 temperature 20.0 30 > th dose dependent rect. 2 1
2 259.63 temperature 20.0 30 > th dose independent rect. 2 1
5 260.64 atmosphere 1005.0 30 > th dose dependent rect. 2 1
6 260.71 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 261.05 wind 3.0 30 < th dose independent rect. 2 1
11 261.12 wind 5.0 30 < th dose dependent rect. 2 1
14 261.17 humidity 80.0 30 > th dose independent rect. 2 1
19 261.30 temperature 10.0 30 > th dose independent rect. 2 1
21 261.30 temperature 30.0 30 < th dose independent rect. 2 1
22 261.30 humidity 50.0 30 > th dose independent rect. 2 1
26 261.30 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 261.30 radiation 1.0 30 < th dose independent rect. 2 1
33 261.30 precipitation 0.1 30 < th dose independent rect. 2 1
34 261.30 temperature 10.0 30 > th dose independent rect. 3 23
35 261.30 radiation 1.0 30 < th dose dependent rect. 2 1
40 261.30 precipitation 0.1 30 < th dose dependent rect. 2 1
42 261.44 humidity 50.0 30 > th dose dependent rect. 2 1
48 262.49 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 263.22 wind 1.0 30 > th dose independent rect. 2 1
52 263.49 temperature 30.0 30 < th dose dependent rect. 2 1
53 264.35 atmosphere 1000.0 90 < th dose dependent rect. 20 3
54 264.37 atmosphere 1000.0 10 < th dose independent rect. 21 1
61 264.37 atmosphere 1000.0 10 < th dose dependent rect. 21 1
66 264.37 radiation 1.0 43200 < th dose dependent rect. 3 1
92 265.46 wind 9.0 1440 < th dose independent rect. 3 1
93 265.46 temperature 10.0 1440 > th dose independent rect. 3 1
96 265.46 temperature 30.0 1440 < th dose independent rect. 3 1
100 265.46 humidity 50.0 1440 > th dose independent rect. 3 1
109 265.46 atmosphere 995.0 1440 > th dose independent rect. 3 1
110 265.46 radiation 1.0 1440 < th dose independent rect. 3 1
130 265.46 temperature 10.0 1440 > th dose independent rect. 4 23
133 265.46 radiation 1.0 1440 < th dose dependent rect. 3 1
151 266.51 temperature 25.0 30 > th dose dependent rect. 21 1
155 266.72 wind 9.0 30 < th dose independent rect. 3 23
164 267.49 atmosphere 995.0 30 > th dose independent rect. 3 23
198 268.91 precipitation 0.1 30 < th dose independent rect. 3 23
199 268.91 temperature 25.0 30 > th dose dependent rect. 21 6
200 268.91 precipitation 0.1 30 < th dose dependent rect. 3 23
204 269.23 atmosphere 1015.0 30 < th dose independent rect. 3 23
211 269.46 wind 7.0 10 > th dose dependent rect. 9 1
216 269.51 temperature 25.0 30 > th dose dependent rect. 21 8
219 269.57 atmosphere 1000.0 90 < th dose dependent rect. 20 5
225 269.79 radiation 10.0 90 < th dose dependent rect. 9 1
230 269.94 atmosphere 995.0 1440 > th dose independent rect. 17 17
255 270.59 temperature 25.0 270 > th dose independent rect. 22 5
260 270.76 wind 1.0 30 > th dose independent rect. 16 17
261 270.76 wind 1.0 30 > th dose independent rect. 14 19
277 270.88 wind 1.0 30 > th dose dependent rect. 7 7
284 270.98 temperature 25.0 270 > th dose dependent rect. 23 3
331 271.43 wind 1.0 30 > th dose independent rect. 3 23
391 272.21 wind 3.0 10 > th dose independent rect. 21 2
395 272.25 wind 7.0 10 > th dose independent rect. 4 6
403 272.43 wind 7.0 10 > th dose independent rect. 9 1
417 272.64 atmosphere 1015.0 30 < th dose independent rect. 14 19
420 272.73 wind 3.0 90 > th dose independent rect. 7 7
430 272.94 atmosphere 1015.0 270 < th dose independent rect. 14 16
433 272.97 atmosphere 995.0 720 > th dose independent rect. 15 23
443 273.03 wind 1.0 30 > th dose dependent rect. 4 10
447 273.07 temperature 10.0 30 > th dose dependent rect. 21 6
448 273.07 wind 3.0 30 > th dose dependent rect. 21 17
449 273.10 wind 1.0 30 < th dose independent rect. 22 5
454 273.15 atmosphere 995.0 1440 > th dose independent rect. 16 6
467 273.22 humidity 50.0 30 > th dose independent rect. 3 23
468 273.22 wind 1.0 90 < th dose dependent rect. 6 1
472 273.28 radiation 40.0 14400 < th dose independent rect. 16 15
473 273.28 wind 3.0 10 > th dose independent rect. 21 17
478 273.31 atmosphere 995.0 720 > th dose independent rect. 23 16
485 273.38 atmosphere 1000.0 270 > th dose independent rect. 14 16
493 273.42 radiation 10.0 90 < th dose dependent rect. 21 13
500 273.48 wind 1.0 30 > th dose dependent rect. 9 5
504 273.50 atmosphere 1015.0 10 < th dose independent rect. 16 17
511 273.53 wind 3.0 90 > th dose independent rect. 21 17
512 273.55 wind 3.0 30 < th dose dependent rect. 22 5
522 273.64 wind 1.0 30 > th dose dependent rect. 2 12
524 273.68 wind 9.0 30 < th dose dependent rect. 3 14
525 273.69 radiation 10.0 90 > th dose independent rect. 6 1
562 273.80 radiation 1.0 270 < th dose independent rect. 16 11
565 273.81 wind 1.0 30 > th dose independent sin 17 NA
566 273.82 wind 3.0 90 > th dose independent rect. 3 11
569 273.83 atmosphere 1000.0 30 > th dose independent rect. 14 19
572 273.84 radiation 1.0 270 < th dose dependent rect. 17 10
574 273.85 wind 1.0 10 > th dose independent rect. 1 8
582 273.88 wind 3.0 90 < th dose independent rect. 3 6
587 273.90 atmosphere 995.0 720 > th dose independent rect. 2 18
588 273.90 atmosphere 995.0 1440 > th dose independent rect. 4 18
590 273.92 wind 1.0 30 > th dose independent rect. 1 23
596 273.94 radiation 10.0 30 < th dose independent rect. 9 18
608 274.01 atmosphere 995.0 720 > th dose independent rect. 11 16
611 274.02 atmosphere 995.0 720 > th dose independent rect. 3 23
617 274.03 wind 9.0 30 < th dose dependent rect. 3 18
626 274.06 wind 1.0 30 < th dose independent rect. 11 16
632 274.09 radiation 20.0 1440 > th dose independent rect. 16 1
633 274.09 radiation 10.0 90 < th dose independent rect. 9 1
651 274.11 wind 5.0 90 < th dose dependent rect. 3 6
653 274.12 radiation 40.0 14400 < th dose independent rect. 16 2
659 274.13 temperature 10.0 30 > th dose dependent rect. 3 18
670 274.16 wind 1.0 30 < th dose independent rect. 2 4
671 274.16 atmosphere 995.0 1440 > th dose independent rect. 16 11
673 274.16 radiation 20.0 30 < th dose dependent sin 11 NA
676 274.17 atmosphere 995.0 720 > th dose independent rect. 8 22
680 274.17 radiation 20.0 30 < th dose dependent rect. 9 18
692 274.23 atmosphere 995.0 720 > th dose independent rect. 11 9
708 274.28 wind 1.0 30 > th dose dependent rect. 24 14
714 274.31 atmosphere 1005.0 10 > th dose dependent rect. 24 3
718 274.31 wind 9.0 30 < th dose dependent rect. 21 6
720 274.33 temperature 15.0 90 > th dose independent rect. 21 6
731 274.35 atmosphere 995.0 720 > th dose independent rect. 8 15
745 274.37 atmosphere 1005.0 90 > th dose dependent rect. 24 3
763 274.42 radiation 10.0 10 < th dose independent rect. 9 1
767 274.42 radiation 40.0 14400 < th dose independent rect. 16 9
777 274.46 wind 5.0 90 < th dose dependent rect. 3 8
781 274.48 wind 1.0 30 > th dose independent sin 7 NA
782 274.48 atmosphere 995.0 1440 > th dose independent rect. 15 21
820 274.52 radiation 40.0 14400 < th dose independent rect. 16 6
821 274.52 wind 3.0 90 < th dose independent rect. 3 8
832 274.56 radiation 10.0 30 > th dose independent sin 10 NA
846 274.56 radiation 10.0 10 < th dose independent rect. 23 12
900 274.63 humidity 90.0 30 < th dose independent rect. 21 2
914 274.67 temperature 25.0 90 < th dose independent rect. 7 2
923 274.68 temperature 10.0 90 > th dose dependent rect. 3 5
936 274.72 temperature 25.0 30 > th dose independent rect. 21 2
942 274.73 atmosphere 1015.0 270 < th dose independent rect. 11 22
945 274.74 wind 9.0 270 < th dose independent rect. 3 15
954 274.76 wind 7.0 10 < th dose independent rect. 3 18
969 274.78 temperature 25.0 270 < th dose independent rect. 23 7
973 274.78 wind 1.0 30 < th dose independent rect. 2 10