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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0360500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FAD linked oxidase, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0477) R2 : 0.179
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.835 (0.116) R2dC : 0.0943 R2C : 0.0848
β3 : 0.93 (0.153) R2dE : 0.0714 R2E : 0.0771
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.2 (0.103) R2dN8 : 0.0095 R2N8 : 0.0194
σ : 0.887
deviance : 362.41
__
_____
C
peak time of C : 21.6
E
wheather : humidity
threshold : 65.23
memory length : 1648
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
359.46 0.891 3.31 -0.136 0.825 0.897 -0.9 -0.214 0.13 21.7 64 1641 -- --
359.47 0.883 3.31 -0.141 0.832 0.905 -0.902 -- 0.13 21.7 64.14 1658 -- --
362.47 0.887 3.31 -0.101 0.834 0.918 -- -0.202 0.129 21.7 64.21 1651 -- --
362.15 0.886 3.3 -0.11 0.84 0.932 -- -- 0.192 21.6 65.08 1654 -- --
402.85 0.935 3.27 -0.0766 -- 0.873 -- -0.324 0.202 -- 65.81 1616 -- --
386.16 0.921 3.26 -0.268 0.799 -- -0.989 -- 0.346 21.9 -- -- -- --
389.94 0.925 3.26 -0.229 0.805 -- -- -- 0.349 21.8 -- -- -- --
402.91 0.935 3.27 -0.0617 -- 0.846 -- -- 0.241 -- 67 1564 -- --
362.41 0.887 3.29 -- 0.835 0.93 -- -- 0.2 21.6 65.23 1648 -- --
428.67 0.967 3.24 -0.221 -- -- -- -- 0.348 -- -- -- -- --
391.32 0.925 3.25 -- 0.804 -- -- -- 0.374 21.8 -- -- -- --
402.49 0.934 3.24 -- -- 0.856 -- -- 0.33 -- 69 1544 -- --
429.96 0.968 3.23 -- -- -- -- -- 0.373 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 345.79 radiation 1.0 43200 < th dose dependent rect. 23 4
14 354.22 precipitation 0.1 43200 > th dose dependent rect. 20 1
17 354.57 wind 7.0 1440 > th dose dependent rect. 17 4
21 355.79 wind 9.0 1440 < th dose independent rect. 17 12
25 356.54 wind 9.0 1440 > th dose independent sin 11 NA
26 356.58 wind 9.0 1440 > th dose dependent sin 11 NA
27 356.65 wind 9.0 1440 < th dose independent sin 12 NA
35 357.11 wind 7.0 1440 > th dose independent rect. 17 4
38 357.29 wind 9.0 1440 < th dose independent rect. 17 15
39 357.33 wind 9.0 1440 < th dose independent rect. 17 10
43 357.41 wind 7.0 1440 > th dose dependent rect. 17 16
48 357.53 wind 7.0 1440 > th dose independent rect. 19 1
59 357.93 wind 9.0 1440 > th dose independent rect. 17 18
61 357.94 wind 7.0 1440 > th dose dependent rect. 17 18
77 358.13 humidity 80.0 1440 > th dose independent rect. 8 1
80 358.26 wind 9.0 1440 < th dose independent rect. 17 17
81 358.27 wind 9.0 1440 < th dose independent rect. 17 5
88 358.44 wind 7.0 1440 > th dose dependent rect. 19 1
92 358.55 wind 9.0 1440 < th dose independent rect. 17 7
96 358.62 wind 7.0 1440 < th dose independent rect. 19 2
98 358.67 wind 9.0 1440 > th dose dependent rect. 19 16
103 358.80 wind 9.0 14400 > th dose dependent rect. 16 7
104 358.93 wind 9.0 14400 > th dose dependent rect. 16 10
109 358.96 wind 9.0 14400 > th dose dependent rect. 17 20
114 359.02 humidity 80.0 1440 < th dose independent rect. 8 1
120 359.07 radiation 10.0 43200 < th dose dependent rect. 7 3
134 359.25 wind 9.0 14400 > th dose dependent rect. 20 2
139 359.33 wind 9.0 14400 > th dose independent rect. 19 4
147 359.42 humidity 70.0 720 > th dose independent rect. 16 19
149 359.47 wind 9.0 14400 < th dose independent rect. 20 2
150 359.47 humidity 70.0 720 > th dose independent rect. 16 21
166 359.64 wind 9.0 14400 > th dose independent rect. 19 7
170 359.66 humidity 70.0 1440 < th dose independent rect. 17 20
199 359.84 wind 9.0 14400 > th dose dependent rect. 19 7
269 360.02 wind 9.0 14400 < th dose independent rect. 19 8
284 360.13 radiation 10.0 43200 < th dose dependent rect. 8 1
285 360.15 humidity 70.0 720 > th dose independent rect. 2 18
302 360.22 precipitation 0.1 43200 > th dose dependent rect. 17 4
305 360.24 wind 9.0 14400 > th dose dependent sin 12 NA
310 360.28 temperature 30.0 270 < th dose independent rect. 12 12
311 360.28 wind 9.0 14400 > th dose independent rect. 17 18
321 360.35 wind 9.0 14400 > th dose independent rect. 17 5
358 360.49 wind 9.0 14400 < th dose independent rect. 17 5
359 360.49 wind 9.0 14400 < th dose independent rect. 17 18
360 360.50 wind 9.0 1440 < th dose independent rect. 15 6
362 360.51 wind 9.0 14400 > th dose independent rect. 17 9
371 360.56 humidity 70.0 720 > th dose independent rect. 8 12
384 360.60 wind 9.0 14400 > th dose dependent rect. 19 16
408 360.65 wind 9.0 14400 < th dose independent rect. 17 10
409 360.65 humidity 70.0 720 > th dose independent rect. 7 14
439 360.79 temperature 30.0 720 < th dose independent rect. 13 3
441 360.79 atmosphere 995.0 43200 > th dose independent rect. 15 7
443 360.79 humidity 70.0 1440 < th dose dependent rect. 19 22
468 360.86 humidity 70.0 1440 < th dose dependent rect. 8 9
470 360.88 wind 9.0 14400 > th dose dependent rect. 17 1
494 360.95 atmosphere 1000.0 43200 > th dose independent rect. 23 1
509 361.01 atmosphere 1000.0 43200 < th dose independent rect. 22 1
515 361.04 wind 9.0 1440 < th dose independent rect. 15 9
517 361.05 humidity 60.0 1440 > th dose independent rect. 14 2
522 361.05 humidity 70.0 1440 < th dose dependent rect. 14 23
525 361.07 atmosphere 1000.0 14400 < th dose independent rect. 6 1
537 361.09 atmosphere 1000.0 14400 > th dose independent rect. 7 1
555 361.11 atmosphere 1000.0 14400 < th dose independent rect. 6 6
557 361.12 atmosphere 1000.0 14400 > th dose independent rect. 6 6
565 361.14 humidity 70.0 1440 < th dose dependent sin 1 NA
602 361.17 atmosphere 1000.0 14400 > th dose independent rect. 9 1
635 361.20 atmosphere 1000.0 14400 > th dose independent rect. 11 1
636 361.20 atmosphere 1000.0 14400 < th dose independent rect. 11 1
660 361.26 temperature 30.0 720 < th dose independent rect. 16 21
661 361.26 wind 1.0 1440 < th dose dependent rect. 10 1
665 361.27 wind 9.0 14400 > th dose independent rect. 19 16
679 361.29 radiation 30.0 720 < th dose dependent rect. 16 16
696 361.33 atmosphere 1000.0 720 > th dose independent rect. 16 21
698 361.33 humidity 70.0 1440 < th dose dependent no NA NA
779 361.35 humidity 70.0 720 > th dose independent rect. 23 21
893 361.49 precipitation 0.1 43200 > th dose dependent rect. 16 2
918 361.56 temperature 30.0 720 < th dose independent rect. 4 21
928 361.59 atmosphere 995.0 43200 < th dose independent rect. 15 7
983 361.77 humidity 70.0 1440 < th dose independent sin 10 NA
984 361.77 radiation 10.0 43200 < th dose independent rect. 9 1
991 361.79 wind 1.0 1440 > th dose independent rect. 10 1
992 361.79 wind 1.0 1440 < th dose independent rect. 10 1
999 361.81 humidity 70.0 1440 > th dose independent sin 9 NA