Os04g0359900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0359900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.93 | 0.339 | 12 | -1.51 | 0.534 | 0.183 | 0.281 | -6.78 | -0.0258 | 22 | 30.2 | 3224 | -- | -- |
| 55.85 | 0.348 | 11.9 | -0.496 | 0.5 | -0.441 | 0.0301 | -- | 0.122 | 21.7 | 29.41 | 5925 | -- | -- |
| 52.22 | 0.337 | 12 | -1.51 | 0.534 | 0.177 | -- | -6.63 | -0.0252 | 21.8 | 30.13 | 3203 | -- | -- |
| 55.31 | 0.346 | 11.9 | -0.479 | 0.531 | -0.449 | -- | -- | 0.0729 | 21.7 | 29.89 | 5814 | -- | -- |
| 69.06 | 0.387 | 12 | -1.54 | -- | 0.221 | -- | -6.45 | -0.0223 | -- | 30.1 | 3155 | -- | -- |
| 66.24 | 0.382 | 11.9 | -0.589 | 0.521 | -- | 0.173 | -- | 0.0947 | 21.6 | -- | -- | -- | -- |
| 66.34 | 0.381 | 11.9 | -0.595 | 0.522 | -- | -- | -- | 0.0947 | 21.5 | -- | -- | -- | -- |
| 70.8 | 0.392 | 11.9 | -0.471 | -- | -0.47 | -- | -- | 0.0641 | -- | 30.39 | 5854 | -- | -- |
| 60.32 | 0.362 | 11.9 | -- | 0.487 | -0.512 | -- | -- | 0.113 | 21.6 | 29.89 | 5881 | -- | -- |
| 82.39 | 0.424 | 11.9 | -0.591 | -- | -- | -- | -- | 0.0934 | -- | -- | -- | -- | -- |
| 75.67 | 0.407 | 11.9 | -- | 0.521 | -- | -- | -- | 0.161 | 21.5 | -- | -- | -- | -- |
| 75.51 | 0.405 | 11.9 | -- | -- | -0.568 | -- | -- | 0.0958 | -- | 31.2 | 5879 | -- | -- |
| 91.6 | 0.447 | 11.9 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.00 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 2 | 51.02 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 3 | 51.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 5 | 51.11 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 11 | 51.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 15 | 51.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 16 | 51.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 26 | 51.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 29 | 51.48 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 32 | 51.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 34 | 51.55 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 43 | 51.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 48 | 51.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 50 | 51.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 63 | 51.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 80 | 51.73 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 13 |
| 83 | 51.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 99 | 51.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 102 | 51.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 115 | 51.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 159 | 51.89 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 176 | 51.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 200 | 52.00 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 296 | 52.21 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 297 | 52.21 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 329 | 52.28 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 355 | 52.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 357 | 52.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 368 | 52.32 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 377 | 52.34 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 387 | 52.36 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 424 | 52.39 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 6 |
| 448 | 52.41 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 496 | 52.47 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 504 | 52.47 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 516 | 52.49 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 519 | 52.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 528 | 52.51 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 579 | 52.57 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 585 | 52.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 608 | 52.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 666 | 52.64 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 12 |
| 719 | 52.69 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 785 | 52.74 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 833 | 52.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 914 | 52.82 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |