FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0357700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.91 (0.0486) R2 : 0.15
β1 : 0.65 (0.178) R2dD : 0.0308 R2D : 0.034
β2 : -- (--) R2dC : -- R2C : --
β3 : -26.3 (4.85) R2dE : 2.33 R2E : -2.57
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -124 (21.2) R2dD*E : 2.69 R2D*E : -2.26
γ1 : 0.178 (0.0948) R2dN8 : 0.00889 R2N8 : -0.0198
σ : 0.829
deviance : 316.7
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 9.005
memory length : 94
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15
open length of G : 1.73

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
313.17 0.831 3.92 0.701 0.264 -26.6 -0.178 -124 0.182 18.6 9.002 96 15 1.57
407.98 0.941 3.96 0.121 0.097 -3.53 -3.3 -- 0.393 16.6 10.05 59 15.3 0.566
313.2 0.824 3.92 0.675 0.263 -26.6 -- -124 0.182 18.5 9 92 15 1.6
339.43 0.864 4.03 1.05 0.296 0.11 -- -- 0.161 18.1 8.778 6 18 0.728
316.7 0.829 3.91 0.65 -- -26.3 -- -124 0.178 -- 9.005 94 15 1.73
338.76 0.863 4.03 1.04 0.298 -- -0.534 -- 0.162 18.4 -- -- -- --
339.44 0.863 4.03 1.05 0.297 -- -- -- 0.161 18.1 -- -- -- --
342.44 0.866 4.02 1.05 -- 1.25 -- -- 0.159 -- 6.568 10 19.9 0.134
367.29 0.893 4.05 -- 0.281 0.847 -- -- 0.0476 18.1 6.602 11 18 1.92
344 0.867 4.02 1.04 -- -- -- -- 0.154 -- -- -- -- --
368.24 0.898 4.06 -- 0.282 -- -- -- 0.0442 18.3 -- -- -- --
364.6 0.889 4.07 -- -- 1.76 -- -- -0.00554 -- 2.769 3 18.9 1.96
372.36 0.901 4.05 -- -- -- -- -- 0.039 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 315.86 wind 9.0 90 > th dose independent rect. 15 1
3 315.90 wind 9.0 90 > th dose dependent rect. 15 1
7 317.71 wind 9.0 10 > th dose independent rect. 15 1
15 317.71 wind 9.0 10 > th dose dependent rect. 15 1
25 317.91 wind 9.0 90 > th dose dependent rect. 12 4
27 318.31 wind 9.0 90 > th dose independent rect. 12 4
32 319.48 temperature 30.0 270 < th dose dependent rect. 24 8
51 320.51 atmosphere 1000.0 90 > th dose dependent rect. 14 5
56 320.88 wind 9.0 30 > th dose dependent rect. 15 20
61 321.23 atmosphere 1000.0 270 > th dose dependent rect. 15 1
63 321.26 temperature 10.0 10 > th dose dependent rect. 23 15
76 321.60 wind 9.0 30 > th dose dependent rect. 15 11
106 321.74 atmosphere 995.0 10 > th dose independent rect. 15 17
107 321.75 temperature 10.0 90 > th dose dependent rect. 20 18
112 321.90 wind 1.0 270 > th dose dependent rect. 15 1
113 321.91 atmosphere 995.0 90 > th dose independent rect. 14 18
118 321.98 temperature 10.0 10 > th dose dependent rect. 20 18
120 322.15 atmosphere 995.0 10 > th dose dependent rect. 15 5
124 322.20 atmosphere 1005.0 90 > th dose independent rect. 14 5
142 322.64 atmosphere 995.0 90 > th dose independent rect. 14 5
145 322.66 atmosphere 1010.0 10 < th dose independent rect. 15 17
155 322.82 wind 3.0 270 > th dose independent rect. 15 1
162 322.92 wind 9.0 270 < th dose dependent rect. 6 9
163 322.94 atmosphere 1005.0 270 > th dose independent rect. 14 2
166 322.99 radiation 10.0 14400 < th dose dependent rect. 21 6
167 323.02 atmosphere 995.0 270 > th dose independent rect. 15 1
180 323.19 humidity 50.0 30 > th dose independent rect. 15 17
181 323.20 radiation 30.0 270 < th dose independent rect. 15 1
184 323.21 atmosphere 995.0 30 > th dose independent rect. 14 9
197 323.31 atmosphere 995.0 10 > th dose independent rect. 14 6
199 323.34 temperature 25.0 10 < th dose independent rect. 15 1
215 323.45 atmosphere 995.0 270 > th dose independent rect. 14 16
232 323.60 radiation 40.0 30 < th dose dependent rect. 14 18
245 323.71 atmosphere 995.0 14400 > th dose independent rect. 15 2
294 323.87 wind 5.0 270 < th dose independent rect. 6 9
296 323.87 wind 1.0 10 > th dose dependent rect. 15 17
303 323.91 humidity 60.0 270 > th dose independent rect. 15 1
306 323.93 wind 9.0 30 > th dose independent rect. 15 20
349 324.04 radiation 1.0 10 < th dose dependent rect. 16 1
368 324.16 radiation 1.0 10 < th dose independent rect. 16 1
370 324.16 atmosphere 995.0 14400 < th dose independent rect. 14 2
386 324.19 humidity 90.0 4320 < th dose independent rect. 21 1
388 324.23 wind 1.0 90 > th dose independent rect. 14 18
393 324.27 precipitation 0.1 270 < th dose independent rect. 16 23
394 324.27 precipitation 0.1 270 < th dose dependent rect. 16 23
399 324.30 wind 9.0 90 < th dose independent rect. 8 6
401 324.31 atmosphere 995.0 30 > th dose dependent rect. 14 9
406 324.34 humidity 90.0 4320 > th dose independent rect. 21 1
424 324.47 humidity 50.0 90 > th dose independent rect. 14 5
425 324.47 temperature 10.0 10 > th dose independent rect. 8 7
427 324.47 atmosphere 995.0 10 > th dose independent rect. 8 7
428 324.47 atmosphere 1015.0 10 < th dose independent rect. 8 7
429 324.47 precipitation 0.1 10 < th dose independent rect. 8 7
430 324.47 temperature 10.0 10 > th dose independent rect. 15 17
432 324.47 precipitation 0.1 10 < th dose dependent rect. 8 7
433 324.48 atmosphere 995.0 14400 < th dose dependent rect. 14 3
454 324.49 wind 9.0 30 > th dose independent rect. 15 11
481 324.51 atmosphere 995.0 14400 < th dose dependent rect. 15 1
486 324.53 radiation 40.0 90 < th dose independent rect. 14 18
500 324.59 wind 3.0 90 > th dose independent rect. 14 5
513 324.60 atmosphere 995.0 14400 > th dose independent rect. 8 9
538 324.65 wind 9.0 90 < th dose independent rect. 19 19
561 324.70 temperature 10.0 1440 > th dose independent rect. 9 7
564 324.70 temperature 10.0 1440 > th dose independent rect. 16 17
567 324.71 radiation 40.0 90 < th dose independent rect. 14 5
588 324.77 atmosphere 995.0 14400 > th dose independent rect. 14 6
595 324.78 wind 1.0 10 > th dose dependent rect. 14 6
596 324.79 atmosphere 995.0 14400 > th dose independent rect. 11 6
599 324.80 radiation 1.0 14400 < th dose dependent rect. 24 1
609 324.81 temperature 10.0 90 > th dose dependent rect. 8 6
617 324.85 atmosphere 1000.0 1440 > th dose independent rect. 8 1
618 324.85 radiation 1.0 90 > th dose independent rect. 8 6
620 324.86 precipitation 0.1 90 < th dose independent rect. 19 19
621 324.86 precipitation 0.1 90 < th dose dependent rect. 19 19
629 324.87 humidity 50.0 90 > th dose independent rect. 19 19
632 324.88 wind 7.0 14400 > th dose independent rect. 18 1
671 324.94 radiation 1.0 10 > th dose independent rect. 8 7
672 324.95 humidity 50.0 90 > th dose independent rect. 8 6
674 324.95 precipitation 0.1 30 < th dose independent rect. 15 17
676 324.95 precipitation 0.1 30 < th dose dependent rect. 15 17
677 324.96 temperature 10.0 90 > th dose independent rect. 14 5
679 324.96 humidity 90.0 90 < th dose independent rect. 14 5
680 324.96 atmosphere 1010.0 90 < th dose independent rect. 14 5
682 324.96 temperature 10.0 90 > th dose independent rect. 19 19
683 324.96 atmosphere 995.0 90 > th dose independent rect. 19 19
691 324.98 wind 1.0 90 > th dose dependent rect. 14 5
692 324.98 temperature 30.0 10 < th dose dependent rect. 3 14
713 325.04 wind 9.0 90 < th dose independent rect. 14 18
715 325.04 temperature 10.0 10 > th dose dependent rect. 8 7
716 325.05 humidity 90.0 270 < th dose independent rect. 15 1
719 325.05 atmosphere 995.0 270 > th dose independent rect. 1 18
725 325.08 atmosphere 1010.0 10 < th dose independent rect. 1 7
726 325.08 humidity 70.0 4320 > th dose dependent rect. 21 1
727 325.09 precipitation 0.1 90 < th dose independent rect. 14 5
732 325.09 precipitation 0.1 90 < th dose dependent rect. 14 5
736 325.10 temperature 15.0 30 > th dose independent rect. 23 15
767 325.14 temperature 30.0 10 < th dose dependent rect. 1 16
788 325.22 wind 9.0 90 < th dose independent rect. 14 5
794 325.22 temperature 30.0 90 < th dose dependent rect. 1 15
821 325.31 wind 7.0 90 < th dose independent rect. 19 23
828 325.33 precipitation 0.1 10 < th dose independent rect. 20 18
829 325.33 precipitation 0.1 10 < th dose dependent rect. 20 18
848 325.40 temperature 15.0 10 > th dose independent rect. 20 18
854 325.42 atmosphere 1010.0 10 < th dose independent rect. 3 5
855 325.42 wind 1.0 30 > th dose independent rect. 8 7
863 325.45 radiation 1.0 270 > th dose independent rect. 18 20
867 325.46 radiation 1.0 90 < th dose dependent rect. 5 11
920 325.53 precipitation 0.1 270 < th dose independent rect. 15 1
922 325.53 precipitation 0.1 270 < th dose dependent rect. 15 1
923 325.53 temperature 30.0 10 < th dose dependent rect. 3 17
924 325.54 radiation 1.0 270 > th dose independent rect. 5 9
927 325.55 temperature 10.0 270 > th dose independent rect. 15 1
929 325.55 atmosphere 1010.0 270 < th dose independent rect. 15 1
931 325.55 temperature 10.0 270 > th dose independent rect. 16 23
935 325.56 atmosphere 1005.0 90 > th dose independent rect. 20 18
956 325.60 temperature 10.0 90 > th dose dependent rect. 14 5
958 325.60 temperature 30.0 10 < th dose dependent rect. 1 19
960 325.63 humidity 50.0 30 > th dose independent rect. 14 9
961 325.63 temperature 30.0 10 < th dose independent rect. 15 17
970 325.66 wind 9.0 10 < th dose independent rect. 15 17
971 325.66 atmosphere 995.0 270 > th dose independent rect. 21 23
977 325.67 temperature 30.0 90 < th dose dependent rect. 1 18