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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0357200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0253) R2 : 0.00139
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0424 (0.0533) R2dN8 : 0.00179 R2N8 : 0.00139
σ : 0.477
deviance : 104.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.77 0.457 3.33 0.135 0.2 0.961 -0.337 1.9 0.0963 5.96 21.59 944 -- --
97.53 0.46 3.3 0.301 0.186 0.529 -0.355 -- 0.154 5.69 24.4 879 -- --
95.02 0.454 3.33 0.122 0.206 0.948 -- 1.88 0.101 6.01 21.8 986 -- --
97.73 0.46 3.3 0.292 0.196 0.493 -- -- 0.152 6.46 24.22 899 -- --
97.02 0.459 3.34 0.126 -- 0.926 -- 1.84 0.101 -- 21.84 876 -- --
101.11 0.471 3.32 0.152 0.22 -- -0.0199 -- 0.056 7.43 -- -- -- --
101.11 0.471 3.32 0.152 0.22 -- -- -- 0.0561 7.48 -- -- -- --
99.58 0.465 3.3 0.301 -- 0.514 -- -- 0.163 -- 24.5 777 -- --
99.67 0.465 3.31 -- 0.207 0.359 -- -- 0.0985 6.6 24.22 884 -- --
103.7 0.476 3.32 0.155 -- -- -- -- 0.0596 -- -- -- -- --
101.72 0.472 3.32 -- 0.222 -- -- -- 0.0392 7.43 -- -- -- --
101.56 0.469 3.31 -- -- 0.383 -- -- 0.109 -- 29.2 610 -- --
104.34 0.477 3.33 -- -- -- -- -- 0.0424 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.50 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 86.76 atmosphere 1000.0 30 > th dose independent rect. 3 23
6 87.38 temperature 25.0 90 > th dose independent rect. 1 1
8 87.51 temperature 25.0 90 > th dose dependent rect. 2 1
9 87.54 atmosphere 1010.0 30 < th dose dependent rect. 2 1
12 87.57 wind 5.0 30 < th dose independent rect. 2 1
14 87.58 humidity 90.0 30 > th dose independent rect. 2 1
15 87.58 wind 9.0 30 < th dose dependent rect. 2 1
18 87.59 temperature 10.0 30 > th dose independent rect. 2 1
20 87.59 temperature 30.0 30 < th dose independent rect. 2 1
21 87.59 humidity 50.0 30 > th dose independent rect. 2 1
24 87.59 atmosphere 995.0 30 > th dose independent rect. 2 1
25 87.59 atmosphere 1010.0 30 < th dose independent rect. 2 1
27 87.59 radiation 1.0 30 < th dose independent rect. 2 1
32 87.59 precipitation 0.1 30 < th dose independent rect. 2 1
33 87.59 temperature 10.0 30 > th dose independent rect. 3 23
35 87.59 humidity 50.0 30 > th dose dependent rect. 2 1
39 87.59 radiation 1.0 30 < th dose dependent rect. 2 1
44 87.59 precipitation 0.1 30 < th dose dependent rect. 2 1
47 87.60 temperature 10.0 30 > th dose dependent rect. 2 1
51 87.61 atmosphere 995.0 30 > th dose dependent rect. 2 1
53 87.62 temperature 30.0 30 < th dose dependent rect. 2 1
55 87.63 wind 1.0 30 > th dose independent rect. 2 1
63 87.71 radiation 1.0 43200 < th dose dependent rect. 3 1
68 87.73 radiation 1.0 4320 < th dose dependent rect. 3 1
85 87.80 wind 9.0 1440 < th dose independent rect. 3 1
86 87.80 temperature 10.0 1440 > th dose independent rect. 3 1
89 87.80 temperature 30.0 1440 < th dose independent rect. 3 1
93 87.80 humidity 50.0 1440 > th dose independent rect. 3 1
102 87.80 atmosphere 995.0 1440 > th dose independent rect. 3 1
103 87.80 radiation 1.0 1440 < th dose independent rect. 3 1
123 87.80 temperature 10.0 1440 > th dose independent rect. 4 23
126 87.80 precipitation 0.1 30 < th dose independent rect. 3 23
137 87.80 precipitation 0.1 30 < th dose dependent rect. 3 23
181 88.23 wind 9.0 30 < th dose independent rect. 3 23
194 89.89 humidity 50.0 30 > th dose independent rect. 3 23
246 92.04 humidity 90.0 90 < th dose independent rect. 2 1
247 92.13 temperature 10.0 720 > th dose independent rect. 15 8
248 92.13 temperature 10.0 720 > th dose independent rect. 23 16
250 92.19 wind 9.0 720 < th dose independent rect. 3 8
251 92.19 temperature 10.0 720 > th dose independent rect. 3 8
252 92.19 atmosphere 995.0 720 > th dose independent rect. 3 8
253 92.19 temperature 10.0 720 > th dose independent rect. 11 16
254 92.19 atmosphere 995.0 720 > th dose independent rect. 23 16
255 92.27 precipitation 0.1 720 < th dose independent rect. 15 8
256 92.27 precipitation 0.1 720 < th dose dependent rect. 15 8
260 92.52 atmosphere 1015.0 720 < th dose independent rect. 3 8
265 92.69 humidity 50.0 720 > th dose independent rect. 3 8
269 92.80 temperature 10.0 30 > th dose dependent rect. 3 23
275 93.04 temperature 15.0 720 > th dose dependent rect. 3 1
279 93.17 precipitation 0.1 720 < th dose independent rect. 11 16
280 93.17 precipitation 0.1 720 < th dose dependent rect. 11 16
281 93.18 temperature 20.0 720 > th dose independent rect. 7 8
298 93.69 radiation 40.0 720 < th dose independent rect. 15 8
300 93.76 precipitation 0.1 720 < th dose independent rect. 3 8
301 93.76 precipitation 0.1 720 < th dose dependent rect. 3 8
305 93.82 atmosphere 1015.0 30 < th dose independent rect. 3 23
310 93.93 temperature 25.0 270 > th dose independent rect. 22 5
311 93.93 temperature 20.0 720 > th dose independent rect. 3 17
316 93.97 precipitation 0.1 720 < th dose independent rect. 23 16
318 93.97 precipitation 0.1 720 < th dose dependent rect. 23 16
319 94.03 temperature 20.0 720 > th dose independent rect. 3 12
327 94.18 temperature 20.0 720 > th dose independent rect. 3 1
364 94.31 atmosphere 995.0 720 > th dose independent rect. 15 8
369 94.38 atmosphere 995.0 720 > th dose independent rect. 11 16
387 94.64 temperature 30.0 30 < th dose independent rect. 3 23
388 94.67 wind 9.0 720 < th dose independent rect. 15 8
390 94.69 temperature 20.0 720 < th dose independent rect. 4 7
391 94.69 temperature 20.0 720 < th dose independent rect. 4 9
394 94.69 temperature 20.0 720 < th dose independent rect. 4 15
397 94.70 temperature 20.0 720 < th dose independent rect. 4 5
402 94.72 temperature 20.0 720 < th dose independent sin 1 NA
406 94.74 temperature 20.0 720 > th dose independent sin 1 NA
449 94.89 wind 1.0 10 < th dose independent rect. 14 13
459 94.93 wind 1.0 10 < th dose independent rect. 17 10
463 94.93 temperature 25.0 270 > th dose dependent rect. 23 4
466 94.95 wind 1.0 10 < th dose independent rect. 21 6
489 95.01 wind 9.0 720 < th dose independent rect. 23 16
499 95.06 wind 3.0 30 < th dose dependent rect. 22 5
502 95.07 wind 1.0 43200 > th dose independent rect. 4 4
507 95.09 wind 1.0 43200 < th dose dependent rect. 4 4
511 95.12 temperature 25.0 720 < th dose dependent rect. 24 8
551 95.21 temperature 25.0 720 < th dose dependent sin 6 NA
556 95.21 temperature 25.0 720 < th dose dependent rect. 23 16
560 95.22 temperature 25.0 720 < th dose dependent rect. 4 3
623 95.32 temperature 20.0 720 < th dose independent rect. 4 1
637 95.36 humidity 90.0 10 > th dose independent rect. 24 3
687 95.44 wind 1.0 43200 < th dose independent rect. 4 4
692 95.44 wind 1.0 43200 < th dose dependent rect. 6 1
696 95.45 temperature 20.0 720 < th dose dependent sin 0 NA
698 95.45 radiation 40.0 30 < th dose dependent rect. 3 23
712 95.48 temperature 20.0 720 > th dose independent rect. 3 6
719 95.49 radiation 10.0 10 < th dose dependent rect. 3 23
745 95.55 temperature 20.0 720 < th dose dependent rect. 4 12
754 95.56 temperature 20.0 720 < th dose dependent rect. 4 10
760 95.56 temperature 20.0 720 < th dose dependent rect. 4 17
864 95.62 wind 9.0 30 < th dose dependent rect. 3 23
971 95.69 atmosphere 1015.0 720 < th dose independent rect. 3 16
993 95.71 temperature 20.0 720 < th dose dependent no NA NA
999 95.71 wind 3.0 30 < th dose dependent rect. 13 14