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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0354400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Male sterility C-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0408) R2 : 0.000162
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0234 (0.0858) R2dN8 : 0.00021 R2N8 : 0.000162
σ : 0.768
deviance : 270.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
256.49 0.746 2.93 0.339 0.114 -0.907 0.543 6.66 0.0654 0.781 50 10 -- --
257.94 0.748 2.96 0.294 0.0432 1.36 0.236 -- 0.0816 23.7 48 3 -- --
256.98 0.752 2.93 0.324 0.127 -0.904 -- 6.38 0.0631 22.6 50 10 -- --
257.7 0.748 2.96 0.217 0.124 1.69 -- -- 0.0703 23.1 47 3 -- --
257.96 0.752 2.93 0.326 -- -0.877 -- 6.16 0.0635 -- 50 10 -- --
267.58 0.767 2.96 0.312 0.0733 -- 0.167 -- 0.0574 23.4 -- -- -- --
267.64 0.766 2.97 0.307 0.0813 -- -- -- 0.0576 21.7 -- -- -- --
258.64 0.749 2.96 0.216 -- 1.64 -- -- 0.0657 -- 47.15 3 -- --
258.82 0.749 2.97 -- 0.129 1.81 -- -- 0.0429 23 47.31 2 -- --
268.03 0.765 2.96 0.307 -- -- -- -- 0.0574 -- -- -- -- --
270.12 0.769 2.97 -- 0.0822 -- -- -- 0.0234 22 -- -- -- --
259.84 0.751 2.97 -- -- 1.75 -- -- 0.0429 -- 47.6 2 -- --
270.52 0.768 2.97 -- -- -- -- -- 0.0234 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 250.33 humidity 60.0 270 > th dose dependent rect. 20 13
2 250.34 atmosphere 1010.0 270 > th dose independent rect. 23 9
4 250.84 wind 9.0 10 > th dose independent rect. 13 1
16 250.84 wind 9.0 10 > th dose dependent rect. 13 1
28 250.86 atmosphere 1010.0 270 > th dose independent rect. 6 2
44 251.42 precipitation 0.1 270 > th dose dependent rect. 16 4
50 251.65 atmosphere 1010.0 270 < th dose independent rect. 21 12
53 251.69 precipitation 0.1 270 > th dose independent rect. 16 1
54 251.69 precipitation 0.1 270 > th dose dependent rect. 16 1
58 251.73 temperature 20.0 720 > th dose independent rect. 20 5
61 251.85 atmosphere 1000.0 270 < th dose dependent rect. 16 1
63 251.89 atmosphere 1000.0 270 < th dose independent rect. 16 1
69 252.08 atmosphere 1010.0 90 > th dose dependent rect. 24 11
72 252.21 atmosphere 1010.0 90 > th dose dependent rect. 8 3
82 252.23 atmosphere 1000.0 270 < th dose dependent rect. 16 3
94 252.40 atmosphere 1010.0 270 > th dose dependent rect. 6 2
98 252.47 atmosphere 1010.0 270 > th dose dependent rect. 24 8
107 252.78 temperature 20.0 720 > th dose independent rect. 12 13
120 253.20 precipitation 0.1 270 > th dose dependent rect. 10 10
124 253.31 humidity 90.0 10 < th dose independent rect. 1 5
135 253.45 temperature 20.0 720 > th dose independent rect. 4 20
136 253.48 precipitation 0.1 270 > th dose dependent rect. 10 8
143 253.51 atmosphere 1010.0 1440 > th dose dependent rect. 11 1
151 253.67 humidity 60.0 720 > th dose independent rect. 20 15
155 253.78 temperature 20.0 720 < th dose independent rect. 23 2
186 254.30 atmosphere 1010.0 270 > th dose independent sin 8 NA
187 254.30 temperature 20.0 720 > th dose independent rect. 23 1
189 254.32 temperature 20.0 720 > th dose independent rect. 12 20
192 254.36 atmosphere 1010.0 270 < th dose independent rect. 4 12
193 254.37 temperature 20.0 10 > th dose independent rect. 14 12
196 254.41 humidity 50.0 720 > th dose independent rect. 20 17
197 254.43 atmosphere 1010.0 270 < th dose independent sin 8 NA
207 254.50 atmosphere 1010.0 270 < th dose independent rect. 20 21
231 254.80 atmosphere 1015.0 1440 < th dose independent rect. 4 7
232 254.82 atmosphere 1015.0 1440 < th dose independent rect. 7 4
239 254.90 temperature 20.0 720 > th dose independent rect. 20 12
245 254.92 humidity 50.0 270 > th dose dependent sin 9 NA
255 254.99 temperature 20.0 720 > th dose independent rect. 20 10
262 255.02 temperature 20.0 90 < th dose dependent rect. 24 1
266 255.06 atmosphere 1015.0 1440 < th dose independent rect. 24 11
267 255.06 temperature 20.0 720 > th dose independent rect. 20 20
268 255.07 humidity 60.0 720 > th dose independent rect. 4 7
270 255.08 temperature 25.0 30 < th dose dependent rect. 17 4
274 255.11 temperature 20.0 720 < th dose independent rect. 9 17
275 255.12 atmosphere 1010.0 270 < th dose independent rect. 2 23
278 255.14 humidity 90.0 10 < th dose independent rect. 19 11
280 255.15 temperature 20.0 720 < th dose independent rect. 14 12
289 255.17 temperature 20.0 720 < th dose independent rect. 17 9
300 255.20 atmosphere 1005.0 90 > th dose dependent rect. 1 22
307 255.23 atmosphere 1015.0 1440 < th dose independent rect. 10 1
327 255.29 humidity 90.0 270 < th dose dependent sin 9 NA
339 255.35 humidity 60.0 270 > th dose dependent rect. 20 19
342 255.36 humidity 90.0 10 < th dose dependent rect. 1 1
352 255.39 humidity 60.0 720 < th dose independent rect. 9 2
356 255.40 atmosphere 1010.0 270 < th dose independent rect. 12 23
363 255.42 humidity 80.0 270 < th dose dependent rect. 21 12
390 255.48 temperature 20.0 720 < th dose independent sin 15 NA
396 255.49 atmosphere 1015.0 1440 > th dose independent rect. 10 1
431 255.51 precipitation 0.1 10 > th dose independent rect. 17 1
460 255.51 precipitation 0.1 10 > th dose dependent rect. 17 1
502 255.54 precipitation 0.1 270 > th dose dependent sin 20 NA
517 255.57 wind 1.0 4320 < th dose dependent rect. 11 1
523 255.59 temperature 20.0 720 > th dose independent sin 15 NA
595 255.68 humidity 50.0 720 < th dose independent rect. 11 1
618 255.68 humidity 50.0 720 < th dose dependent rect. 11 1
655 255.72 atmosphere 1005.0 10 > th dose dependent rect. 19 19
663 255.75 humidity 90.0 10 < th dose dependent rect. 1 13
670 255.76 atmosphere 995.0 90 > th dose dependent rect. 1 13
671 255.76 atmosphere 1005.0 10 > th dose dependent rect. 8 22
674 255.77 wind 3.0 90 < th dose dependent rect. 19 1
675 255.77 temperature 10.0 720 > th dose dependent rect. 4 4
738 255.90 humidity 90.0 270 < th dose dependent rect. 19 16
739 255.90 temperature 20.0 270 < th dose dependent rect. 5 21
741 255.91 humidity 90.0 270 < th dose independent rect. 15 21
743 255.91 humidity 50.0 10 > th dose dependent rect. 21 20
779 255.99 atmosphere 1010.0 90 > th dose dependent sin 3 NA
805 256.07 humidity 90.0 270 > th dose independent rect. 18 14
809 256.08 humidity 80.0 90 < th dose independent rect. 24 1
810 256.08 humidity 80.0 10 < th dose independent rect. 24 2
892 256.23 atmosphere 1005.0 720 > th dose dependent rect. 17 12
913 256.27 humidity 50.0 10 < th dose independent rect. 16 22
927 256.28 atmosphere 1005.0 270 > th dose dependent rect. 22 13
944 256.32 humidity 50.0 10 < th dose dependent sin 7 NA
964 256.35 wind 3.0 10 < th dose dependent rect. 19 1
965 256.35 precipitation 0.1 90 > th dose dependent rect. 16 9
969 256.36 humidity 50.0 10 < th dose independent sin 2 NA
970 256.36 humidity 50.0 30 > th dose independent rect. 21 22
984 256.37 humidity 90.0 270 > th dose independent rect. 18 23
990 256.37 humidity 90.0 10 < th dose dependent rect. 20 18