Os04g0350300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phragmoplast-associated kinesin-related protein 1 (Fragment).
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Os04g0350300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phragmoplast-associated kinesin-related protein 1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.88 | 0.445 | 6.51 | -0.336 | 1.2 | 0.182 | -0.412 | 1.92 | 0.556 | 3.09 | 1015 | 4148 | -- | -- |
| 99.62 | 0.465 | 6.53 | -0.714 | 1.17 | 0.283 | -0.197 | -- | 0.51 | 3.16 | 1014 | 6725 | -- | -- |
| 90.27 | 0.443 | 6.51 | -0.319 | 1.18 | 0.157 | -- | 1.86 | 0.564 | 3.01 | 1015 | 4124 | -- | -- |
| 99.45 | 0.464 | 6.51 | -0.716 | 1.19 | 0.329 | -- | -- | 0.48 | 3.12 | 1014 | 6687 | -- | -- |
| 172.49 | 0.612 | 6.5 | -0.3 | -- | 0.242 | -- | 1.79 | 0.575 | -- | 1015 | 3984 | -- | -- |
| 104.2 | 0.479 | 6.51 | -0.631 | 1.21 | -- | -0.267 | -- | 0.526 | 3.11 | -- | -- | -- | -- |
| 104.44 | 0.479 | 6.51 | -0.625 | 1.2 | -- | -- | -- | 0.528 | 3.1 | -- | -- | -- | -- |
| 181.66 | 0.628 | 6.53 | -0.723 | -- | 0.351 | -- | -- | 0.466 | -- | 1015 | 6459 | -- | -- |
| 111.81 | 0.492 | 6.51 | -- | 1.18 | 0.313 | -- | -- | 0.557 | 3.08 | 1014 | 4322 | -- | -- |
| 187.2 | 0.639 | 6.51 | -0.574 | -- | -- | -- | -- | 0.559 | -- | -- | -- | -- | -- |
| 114.73 | 0.501 | 6.5 | -- | 1.19 | -- | -- | -- | 0.597 | 3.1 | -- | -- | -- | -- |
| 191.1 | 0.644 | 6.51 | -- | -- | 0.414 | -- | -- | 0.573 | -- | 1014 | 4120 | -- | -- |
| 195.89 | 0.653 | 6.49 | -- | -- | -- | -- | -- | 0.623 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.05 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 2 | 88.05 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 16 | 88.55 | wind | 7.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 19 | 88.60 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 77 | 89.16 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 99 | 89.34 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 414 | 90.08 | atmosphere | 1015.0 | 4320 | < th | dose independent | no | NA | NA |
| 452 | 90.14 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 456 | 90.15 | atmosphere | 1015.0 | 4320 | > th | dose independent | no | NA | NA |
| 461 | 90.15 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 23 | 8 |
| 475 | 90.18 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 479 | 90.19 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 24 | 6 |
| 480 | 90.19 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 501 | 90.23 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 1 | 4 |
| 504 | 90.24 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 552 | 90.35 | wind | 7.0 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 559 | 90.36 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 9 | NA |
| 564 | 90.37 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 566 | 90.37 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 599 | 90.43 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 609 | 90.44 | wind | 7.0 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 614 | 90.44 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 654 | 90.53 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 663 | 90.55 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 692 | 90.61 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 16 | 12 |
| 711 | 90.64 | wind | 7.0 | 1440 | > th | dose independent | rect. | 24 | 5 |
| 717 | 90.64 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 719 | 90.64 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 743 | 90.67 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 750 | 90.67 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 778 | 90.70 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 785 | 90.71 | wind | 7.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 809 | 90.74 | atmosphere | 1010.0 | 4320 | > th | dose dependent | sin | 14 | NA |
| 821 | 90.75 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 850 | 90.78 | wind | 7.0 | 1440 | > th | dose independent | rect. | 21 | 11 |
| 876 | 90.81 | wind | 7.0 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 971 | 90.91 | atmosphere | 1000.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |