Os04g0349700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, typical subtype containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0349700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Leucine-rich repeat, typical subtype containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 199.04 | 0.663 | 10.3 | 1.45 | 3.02 | -1.61 | 1.33 | 4.09 | 0.211 | 13 | 20 | 1331 | 11.2 | 1.04 |
| 227.55 | 0.703 | 10.3 | 1.58 | 2.94 | -1.28 | 1.16 | -- | 0.283 | 13 | 21.6 | 1269 | 11.6 | 1.68 |
| 205.65 | 0.668 | 10.3 | 1.5 | 3.04 | -1.65 | -- | 4.16 | 0.213 | 13 | 19.22 | 1337 | 11.2 | 0.967 |
| 232.81 | 0.711 | 10.3 | 1.68 | 2.92 | -1.28 | -- | -- | 0.323 | 13.1 | 21.56 | 1174 | 11.7 | 1.62 |
| 239.19 | 0.72 | 10.3 | 1.58 | -- | -3.26 | -- | -1.79 | 0.264 | -- | 44.84 | 849 | 14.5 | 5.76 |
| 272.6 | 0.774 | 10.2 | 1.78 | 3.07 | -- | 1.07 | -- | 0.539 | 12.9 | -- | -- | -- | -- |
| 277.35 | 0.78 | 10.2 | 1.82 | 3.07 | -- | -- | -- | 0.546 | 13 | -- | -- | -- | -- |
| 234.13 | 0.713 | 10.3 | 1.75 | -- | -3.33 | -- | -- | 0.469 | -- | 49.28 | 856 | 14.4 | 5.88 |
| 306.31 | 0.815 | 10.3 | -- | 2.97 | -1.31 | -- | -- | 0.211 | 13 | 23.02 | 1274 | 11.8 | 1.5 |
| 863.54 | 1.37 | 10.3 | 1.7 | -- | -- | -- | -- | 0.487 | -- | -- | -- | -- | -- |
| 364.33 | 0.893 | 10.3 | -- | 3.04 | -- | -- | -- | 0.343 | 12.9 | -- | -- | -- | -- |
| 314.26 | 0.826 | 10.3 | -- | -- | -3.51 | -- | -- | 0.228 | -- | 52.03 | 866 | 13.6 | 6.91 |
| 939.97 | 1.43 | 10.3 | -- | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 209.51 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 2 | 209.97 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 4 | 211.59 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 5 | 211.68 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 11 | 212.82 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 12 | 212.82 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 13 | 212.98 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 14 | 212.98 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 15 | 213.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 16 | 213.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 17 | 213.04 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 18 | 213.06 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 19 | 213.24 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 20 | 213.24 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 23 | 213.38 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 25 | 213.47 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 52 | 214.10 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 81 | 215.50 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 86 | 215.69 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 100 | 216.27 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 122 | 217.21 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 138 | 217.79 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 140 | 217.87 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 166 | 218.90 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 183 | 219.31 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 185 | 219.31 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 187 | 219.31 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 238 | 219.31 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 242 | 219.31 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 299 | 219.48 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 322 | 220.10 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 323 | 220.10 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 335 | 220.29 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 336 | 220.30 | temperature | 20.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 344 | 220.47 | temperature | 20.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 367 | 220.82 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 368 | 220.84 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 391 | 221.49 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 395 | 221.51 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 423 | 222.31 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 459 | 223.29 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 471 | 223.47 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 520 | 224.54 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 587 | 225.24 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 588 | 225.25 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 609 | 225.46 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 629 | 225.64 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 678 | 226.06 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 688 | 226.11 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 697 | 226.22 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 719 | 226.31 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 765 | 226.63 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 803 | 226.96 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 804 | 226.96 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 11 | 22 |
| 806 | 226.98 | radiation | 10.0 | 270 | < th | dose independent | rect. | 24 | 19 |
| 828 | 227.11 | radiation | 10.0 | 270 | < th | dose independent | rect. | 23 | 21 |
| 830 | 227.13 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 860 | 227.25 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 877 | 227.36 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 10 | 20 |
| 883 | 227.39 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 895 | 227.44 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 901 | 227.48 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 11 | 16 |
| 913 | 227.56 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 920 | 227.57 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 975 | 227.87 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 24 | 11 |