Os04g0349600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os04g0349600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.5 | 0.452 | 9.28 | 0.817 | 0.705 | 0.212 | 0.621 | 4.1 | -0.477 | 13.4 | 14.76 | 4145 | -- | -- |
| 103.6 | 0.474 | 9.42 | -0.168 | 0.716 | 0.309 | 0.472 | -- | -0.662 | 13.2 | 29.83 | 4816 | -- | -- |
| 93.58 | 0.451 | 9.28 | 0.802 | 0.697 | 0.25 | -- | 4.01 | -0.476 | 13.4 | 14.6 | 4501 | -- | -- |
| 104.3 | 0.476 | 9.42 | -0.177 | 0.703 | 0.389 | -- | -- | -0.656 | 13.4 | 29.6 | 1868 | -- | -- |
| 119.42 | 0.512 | 9.42 | 0.0913 | -- | 0.861 | -- | 2.69 | -0.755 | -- | 14.6 | 4532 | -- | -- |
| 108.27 | 0.488 | 9.43 | -0.103 | 0.684 | -- | 0.456 | -- | -0.723 | 13.4 | -- | -- | -- | -- |
| 109.1 | 0.489 | 9.43 | -0.0871 | 0.685 | -- | -- | -- | -0.72 | 13.5 | -- | -- | -- | -- |
| 122.92 | 0.519 | 9.43 | -0.208 | -- | 0.964 | -- | -- | -0.723 | -- | 27.7 | 1767 | -- | -- |
| 105.07 | 0.477 | 9.41 | -- | 0.704 | 0.375 | -- | -- | -0.648 | 13.4 | 29.7 | 1867 | -- | -- |
| 137.85 | 0.549 | 9.44 | -0.114 | -- | -- | -- | -- | -0.735 | -- | -- | -- | -- | -- |
| 109.3 | 0.489 | 9.42 | -- | 0.686 | -- | -- | -- | -0.711 | 13.5 | -- | -- | -- | -- |
| 124.04 | 0.52 | 9.43 | -- | -- | 0.932 | -- | -- | -0.701 | -- | 27.7 | 1767 | -- | -- |
| 138.2 | 0.549 | 9.43 | -- | -- | -- | -- | -- | -0.722 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.74 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 2 | 91.00 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 3 | 91.04 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 5 | 91.09 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 13 | 91.27 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 15 | 91.27 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 17 | 91.29 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 81 | 91.75 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 94 | 91.79 | temperature | 15 | 4320 | > th | dose dependent | rect. | 10 | 15 |
| 100 | 91.82 | temperature | 15 | 4320 | > th | dose dependent | sin | 18 | NA |
| 151 | 91.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 186 | 92.04 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 190 | 92.05 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 194 | 92.06 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 215 | 92.10 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 227 | 92.12 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 281 | 92.25 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 283 | 92.25 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 285 | 92.25 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 379 | 92.43 | temperature | 30 | 4320 | < th | dose dependent | sin | 17 | NA |
| 410 | 92.50 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 420 | 92.51 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 17 |
| 452 | 92.57 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |
| 460 | 92.57 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 461 | 92.57 | temperature | 15 | 4320 | > th | dose dependent | rect. | 16 | 23 |
| 551 | 92.66 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 574 | 92.69 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 15 |
| 759 | 92.88 | temperature | 30 | 4320 | < th | dose dependent | rect. | 16 | 20 |
| 811 | 92.94 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 849 | 92.97 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 880 | 93.00 | temperature | 15 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 909 | 93.02 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 980 | 93.09 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |