Os04g0349500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S8.
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Os04g0349500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S8.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69 | 0.39 | 13.4 | 0.199 | 0.705 | 1.49 | 0.621 | -0.506 | 0.159 | 18.4 | 20.57 | 2847 | -- | -- |
| 69.43 | 0.388 | 13.4 | 0.304 | 0.7 | 1.56 | 0.662 | -- | 0.182 | 18.4 | 20.58 | 2845 | -- | -- |
| 68.66 | 0.386 | 13.4 | 0.214 | 0.698 | 1.41 | -- | -0.664 | 0.124 | 18.2 | 21.3 | 2831 | -- | -- |
| 69.53 | 0.388 | 13.4 | 0.389 | 0.706 | 1.44 | -- | -- | 0.176 | 18.2 | 21.3 | 2829 | -- | -- |
| 92.98 | 0.449 | 13.4 | 0.396 | -- | 1.35 | -- | -0.301 | 0.173 | -- | 21.4 | 2066 | -- | -- |
| 122.32 | 0.518 | 13.3 | 1.16 | 0.659 | -- | 0.891 | -- | 0.607 | 18.7 | -- | -- | -- | -- |
| 124.26 | 0.522 | 13.3 | 1.15 | 0.664 | -- | -- | -- | 0.611 | 18.5 | -- | -- | -- | -- |
| 93.24 | 0.45 | 13.4 | 0.477 | -- | 1.39 | -- | -- | 0.186 | -- | 21.3 | 2065 | -- | -- |
| 71.92 | 0.395 | 13.4 | -- | 0.707 | 1.72 | -- | -- | 0.128 | 18.3 | 20.6 | 2939 | -- | -- |
| 147.22 | 0.567 | 13.3 | 1.13 | -- | -- | -- | -- | 0.597 | -- | -- | -- | -- | -- |
| 158.88 | 0.59 | 13.3 | -- | 0.65 | -- | -- | -- | 0.483 | 18.6 | -- | -- | -- | -- |
| 95.9 | 0.456 | 13.4 | -- | -- | 1.69 | -- | -- | 0.103 | -- | 20.5 | 3372 | -- | -- |
| 180.88 | 0.628 | 13.3 | -- | -- | -- | -- | -- | 0.472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 2 | 65.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 11 | 67.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 15 | 67.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 54 | 68.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 58 | 68.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 85 | 69.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 93 | 69.25 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 155 | 69.61 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 180 | 69.76 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 201 | 69.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 218 | 69.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 233 | 70.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 241 | 70.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 261 | 70.22 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 303 | 70.40 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 314 | 70.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 328 | 70.52 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 346 | 70.60 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 815 | 71.94 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 845 | 72.02 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 847 | 72.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |