FiT-DB / Search/ Help/ Sample detail

Os04g0348400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : U box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0173) R2 : 0.0169
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.102 (0.0365) R2dN8 : 0.0219 R2N8 : 0.0169
σ : 0.326
deviance : 48.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.96 0.266 10.9 0.266 0.47 -0.402 -0.184 -0.765 0.121 23.3 69.93 708 -- --
32.53 0.266 10.8 0.304 0.409 -0.441 -0.361 -- 0.146 22.4 69 523 -- --
32.07 0.264 10.9 0.262 0.469 -0.384 -- -0.871 0.119 23.4 69.95 716 -- --
32.1 0.264 10.9 0.291 0.498 -0.355 -- -- 0.133 0.78 70 1094 -- --
41.58 0.302 10.8 0.302 -- -0.242 -- 0.0762 0.127 -- 69.95 716 -- --
36.52 0.283 10.9 0.264 0.404 -- -0.103 -- 0.125 1.07 -- -- -- --
36.55 0.283 10.8 0.268 0.405 -- -- -- 0.125 1.18 -- -- -- --
41.08 0.299 10.8 0.368 -- -0.452 -- -- 0.163 -- 69 1745 -- --
34.95 0.275 10.9 -- 0.509 -0.324 -- -- 0.113 0.867 69.68 1100 -- --
46.72 0.319 10.8 0.283 -- -- -- -- 0.134 -- -- -- -- --
38.45 0.29 10.9 -- 0.41 -- -- -- 0.0956 1.2 -- -- -- --
43.87 0.309 10.9 -- -- -0.239 -- -- 0.0936 -- 69 1745 -- --
48.84 0.326 10.9 -- -- -- -- -- 0.102 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.03 temperature 15.0 270 > th dose dependent rect. 18 8
3 31.06 temperature 20.0 270 > th dose independent rect. 18 9
10 31.18 humidity 70.0 720 > th dose independent rect. 16 19
11 31.19 humidity 70.0 720 > th dose independent rect. 16 21
36 31.50 humidity 70.0 720 > th dose independent rect. 15 14
37 31.51 radiation 10.0 720 < th dose independent rect. 15 19
39 31.53 humidity 70.0 720 > th dose independent rect. 9 20
47 31.59 humidity 70.0 720 > th dose independent sin 17 NA
67 31.66 humidity 70.0 720 > th dose independent sin 10 NA
70 31.67 radiation 10.0 720 < th dose independent sin 13 NA
71 31.67 humidity 70.0 1440 < th dose independent rect. 6 7
95 31.72 humidity 70.0 720 > th dose independent rect. 15 8
102 31.75 radiation 10.0 270 < th dose independent rect. 6 21
110 31.77 temperature 15.0 10 > th dose dependent rect. 20 9
113 31.79 humidity 70.0 720 < th dose independent rect. 6 13
146 31.86 radiation 10.0 270 < th dose independent rect. 9 17
154 31.87 humidity 70.0 720 < th dose independent rect. 14 23
177 31.90 radiation 10.0 720 < th dose dependent rect. 17 17
195 31.94 humidity 70.0 720 < th dose independent sin 0 NA
201 31.94 wind 1.0 43200 < th dose dependent rect. 5 2
202 31.94 radiation 40.0 270 < th dose dependent rect. 10 16
205 31.95 humidity 70.0 720 > th dose independent rect. 16 5
212 31.96 humidity 70.0 720 < th dose independent no NA NA
214 31.96 humidity 70.0 1440 > th dose independent rect. 3 10
290 31.96 radiation 1.0 90 < th dose dependent sin 12 NA
292 31.97 radiation 1.0 90 < th dose independent sin 12 NA
293 31.97 humidity 70.0 1440 < th dose independent rect. 11 2
294 31.97 humidity 70.0 1440 > th dose independent rect. 7 6
314 31.97 radiation 10.0 270 < th dose dependent rect. 6 21
323 31.99 temperature 30.0 270 < th dose dependent sin 9 NA
330 32.00 wind 1.0 43200 < th dose independent rect. 22 10
333 32.01 humidity 70.0 720 > th dose independent no NA NA
336 32.01 wind 1.0 43200 > th dose independent rect. 5 2
393 32.05 radiation 30.0 720 < th dose independent rect. 11 18
394 32.06 humidity 70.0 1440 < th dose independent sin 7 NA
402 32.06 wind 1.0 43200 > th dose dependent rect. 1 2
407 32.07 wind 1.0 43200 > th dose independent rect. 22 9
412 32.07 humidity 70.0 720 < th dose independent rect. 10 23
425 32.09 wind 5.0 270 < th dose independent rect. 18 9
431 32.09 wind 9.0 43200 < th dose dependent rect. 1 2
438 32.10 wind 1.0 30 > th dose independent sin 19 NA
443 32.10 precipitation 0.1 270 < th dose independent rect. 3 15
447 32.10 precipitation 0.1 270 < th dose dependent rect. 3 15
450 32.11 radiation 10.0 720 < th dose independent rect. 16 9
459 32.11 temperature 30.0 270 < th dose dependent rect. 22 11
501 32.14 radiation 30.0 720 < th dose independent rect. 11 9
527 32.15 humidity 70.0 720 > th dose independent rect. 20 23
528 32.15 humidity 70.0 720 > th dose independent rect. 22 23
550 32.18 humidity 80.0 4320 < th dose independent rect. 8 2
556 32.19 atmosphere 1000.0 270 > th dose independent rect. 17 9
562 32.19 humidity 50.0 270 > th dose dependent rect. 18 8
563 32.19 radiation 10.0 10 < th dose dependent rect. 20 18
564 32.20 temperature 30.0 720 < th dose independent sin 16 NA
570 32.20 wind 5.0 270 < th dose independent rect. 18 20
583 32.21 radiation 1.0 90 < th dose dependent rect. 19 19
586 32.22 wind 1.0 43200 < th dose independent rect. 5 2
595 32.22 atmosphere 1015.0 270 < th dose dependent rect. 14 5
603 32.23 wind 5.0 270 < th dose independent rect. 19 18
606 32.23 humidity 70.0 720 > th dose independent rect. 2 23
607 32.23 radiation 10.0 720 < th dose dependent sin 11 NA
609 32.23 radiation 10.0 720 < th dose dependent rect. 22 13
610 32.23 radiation 10.0 10 < th dose dependent rect. 20 16
628 32.24 wind 9.0 270 < th dose dependent rect. 18 8
631 32.25 wind 1.0 43200 > th dose independent rect. 3 5
633 32.25 atmosphere 1015.0 270 < th dose independent rect. 18 9
651 32.26 temperature 10.0 270 > th dose dependent rect. 19 15
653 32.26 radiation 1.0 90 < th dose dependent rect. 19 22
661 32.27 temperature 30.0 720 < th dose independent rect. 14 11
675 32.28 wind 1.0 43200 > th dose independent rect. 2 7
680 32.28 radiation 1.0 270 < th dose independent rect. 18 9
697 32.29 humidity 80.0 4320 > th dose independent rect. 8 2
723 32.29 temperature 10.0 270 > th dose dependent sin 10 NA
725 32.29 wind 1.0 43200 > th dose dependent rect. 5 1
726 32.29 wind 9.0 43200 < th dose dependent rect. 5 1
727 32.29 radiation 10.0 270 < th dose dependent rect. 18 9
734 32.30 radiation 30.0 720 < th dose independent sin 19 NA
738 32.30 humidity 50.0 270 > th dose independent rect. 18 9
743 32.30 wind 9.0 270 < th dose independent rect. 3 15
744 32.30 temperature 10.0 270 > th dose independent rect. 3 15
746 32.30 atmosphere 1015.0 270 < th dose independent rect. 3 15
750 32.30 humidity 50.0 720 > th dose dependent sin 16 NA
751 32.30 wind 9.0 43200 < th dose dependent rect. 22 8
762 32.31 radiation 10.0 720 < th dose independent rect. 16 7
768 32.31 radiation 1.0 90 < th dose independent rect. 19 19
774 32.31 humidity 50.0 720 > th dose dependent rect. 11 18
791 32.32 humidity 80.0 1440 < th dose dependent rect. 6 7
792 32.32 wind 1.0 43200 > th dose dependent rect. 22 8
799 32.33 wind 1.0 43200 < th dose independent rect. 2 7
818 32.33 humidity 90.0 720 < th dose dependent rect. 20 19
820 32.33 humidity 50.0 720 > th dose dependent rect. 18 20
824 32.34 humidity 60.0 4320 > th dose independent rect. 11 2
826 32.34 radiation 20.0 4320 < th dose independent rect. 1 7
828 32.34 radiation 20.0 4320 < th dose independent rect. 23 9
834 32.34 temperature 30.0 720 < th dose independent rect. 13 14
835 32.34 radiation 20.0 4320 < th dose independent rect. 17 15
838 32.34 temperature 30.0 720 < th dose independent rect. 13 22
842 32.34 humidity 50.0 720 > th dose dependent rect. 17 6
846 32.34 humidity 50.0 720 > th dose dependent rect. 9 20
848 32.35 radiation 20.0 4320 < th dose independent rect. 5 3
849 32.35 radiation 20.0 4320 < th dose independent rect. 3 5
860 32.35 radiation 1.0 90 < th dose dependent rect. 19 13
890 32.36 humidity 90.0 720 < th dose dependent sin 2 NA
914 32.37 wind 1.0 43200 < th dose independent rect. 18 14
919 32.37 atmosphere 1015.0 270 < th dose independent rect. 19 19
926 32.37 precipitation 0.1 43200 > th dose dependent rect. 19 3
974 32.39 precipitation 0.1 43200 > th dose dependent rect. 16 1
985 32.40 radiation 10.0 720 < th dose independent sin 19 NA
989 32.40 temperature 30.0 270 < th dose independent rect. 17 9