FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0347100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.032) R2 : 0.000256
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.023 (0.0675) R2dN8 : 0.00033 R2N8 : 0.000256
σ : 0.603
deviance : 167.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
158.27 0.586 2.95 -0.286 0.08 0.884 0.282 -2.46 -0.0428 15.1 1015 10 -- --
160.84 0.595 2.95 -0.318 0.0749 0.912 0.422 -- -0.0484 14.3 1015 10 -- --
158.51 0.591 2.95 -0.278 0.0838 0.844 -- -2.49 -0.0408 15.7 1015 19 -- --
161.45 0.596 2.95 -0.306 0.0838 0.906 -- -- -0.0456 15.7 1015 10 -- --
158.9 0.59 2.95 -0.282 -- 0.82 -- -2.48 -0.0433 -- 1015 24 -- --
163.71 0.6 2.95 -0.322 0.0512 -- 0.428 -- -0.059 14.3 -- -- -- --
164.27 0.6 2.95 -0.31 0.0725 -- -- -- -0.0559 16.9 -- -- -- --
160.16 0.589 2.95 -0.217 -- 0.973 -- -- -0.0727 -- 1016 62 -- --
163.91 0.6 2.94 -- 0.09 0.918 -- -- -0.0114 15.6 1015 10 -- --
164.55 0.599 2.95 -0.313 -- -- -- -- -0.0577 -- -- -- -- --
166.8 0.604 2.95 -- 0.0781 -- -- -- -0.0213 16.8 -- -- -- --
160.81 0.591 2.95 -- -- 1.73 -- -- -0.0197 -- 1016 65 -- --
167.13 0.603 2.95 -- -- -- -- -- -0.023 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.12 wind 7.0 90 > th dose dependent rect. 13 1
2 146.15 wind 7.0 90 > th dose independent rect. 13 1
6 146.51 wind 7.0 10 > th dose dependent rect. 13 1
63 150.69 atmosphere 1015.0 30 < th dose independent rect. 3 23
77 151.79 atmosphere 1000.0 90 < th dose dependent rect. 10 4
86 152.09 atmosphere 1000.0 270 < th dose dependent rect. 10 1
92 152.32 atmosphere 1015.0 10 < th dose independent rect. 14 23
96 152.72 atmosphere 1000.0 270 < th dose independent rect. 10 1
97 152.74 temperature 30.0 270 > th dose dependent rect. 8 3
112 152.82 temperature 30.0 270 > th dose dependent rect. 10 1
122 153.00 radiation 10.0 90 < th dose independent rect. 12 1
143 153.58 radiation 10.0 10 < th dose independent rect. 13 1
175 154.31 atmosphere 1015.0 30 < th dose independent rect. 14 12
178 154.48 wind 1.0 10 > th dose independent rect. 14 23
180 154.49 radiation 20.0 10 < th dose dependent rect. 14 1
190 154.67 wind 1.0 10 < th dose dependent rect. 11 1
194 154.81 temperature 30.0 270 > th dose dependent sin 9 NA
198 154.90 temperature 20.0 10 > th dose independent rect. 13 1
202 154.97 wind 9.0 10 < th dose independent rect. 3 23
207 155.06 radiation 30.0 90 < th dose dependent rect. 12 1
245 155.39 atmosphere 1005.0 10 > th dose independent rect. 13 1
249 155.42 wind 7.0 720 < th dose independent rect. 14 1
251 155.43 temperature 25.0 90 > th dose dependent rect. 1 1
252 155.43 radiation 1.0 14400 < th dose dependent rect. 3 1
269 155.48 humidity 50.0 90 < th dose independent rect. 13 2
270 155.48 humidity 50.0 90 < th dose dependent rect. 13 2
277 155.53 temperature 30.0 90 > th dose dependent sin 6 NA
278 155.54 wind 7.0 720 > th dose independent rect. 13 1
280 155.56 temperature 20.0 30 > th dose independent rect. 2 1
281 155.56 temperature 30.0 270 > th dose independent rect. 8 3
298 155.58 wind 1.0 10 < th dose independent rect. 11 1
305 155.59 wind 9.0 1440 < th dose independent rect. 3 1
306 155.59 temperature 10.0 1440 > th dose independent rect. 3 1
309 155.59 temperature 30.0 1440 < th dose independent rect. 3 1
313 155.59 humidity 50.0 1440 > th dose independent rect. 3 1
322 155.59 atmosphere 995.0 1440 > th dose independent rect. 3 1
323 155.59 radiation 1.0 1440 < th dose independent rect. 3 1
343 155.59 temperature 10.0 1440 > th dose independent rect. 4 23
353 155.61 atmosphere 1005.0 30 > th dose dependent rect. 2 1
367 155.66 wind 1.0 30 < th dose independent rect. 2 1
369 155.67 atmosphere 1005.0 30 > th dose independent rect. 2 1
374 155.68 wind 3.0 30 < th dose dependent rect. 2 1
393 155.71 humidity 60.0 10 > th dose independent rect. 13 1
402 155.75 humidity 80.0 30 > th dose independent rect. 2 1
407 155.76 temperature 30.0 270 > th dose independent sin 8 NA
431 155.82 atmosphere 995.0 30 > th dose independent rect. 3 23
432 155.82 humidity 80.0 30 > th dose dependent rect. 2 1
434 155.83 humidity 50.0 30 > th dose dependent rect. 2 1
438 155.84 temperature 10.0 30 > th dose independent rect. 2 1
441 155.84 temperature 30.0 30 < th dose independent rect. 2 1
442 155.84 humidity 50.0 30 > th dose independent rect. 2 1
445 155.84 atmosphere 995.0 30 > th dose independent rect. 2 1
447 155.84 atmosphere 1010.0 30 < th dose independent rect. 2 1
449 155.84 radiation 1.0 30 < th dose independent rect. 2 1
456 155.84 precipitation 0.1 30 < th dose independent rect. 2 1
457 155.84 temperature 10.0 30 > th dose independent rect. 3 23
460 155.84 radiation 1.0 30 < th dose dependent rect. 2 1
465 155.84 precipitation 0.1 30 < th dose dependent rect. 2 1
472 155.89 radiation 40.0 4320 < th dose dependent rect. 18 4
488 155.97 wind 9.0 10 > th dose independent rect. 13 9
529 156.00 wind 7.0 720 > th dose dependent rect. 13 1
530 156.00 atmosphere 1015.0 30 < th dose dependent rect. 2 1
580 156.17 temperature 30.0 30 < th dose dependent rect. 2 1
624 156.30 wind 1.0 30 > th dose independent rect. 2 1
628 156.33 temperature 30.0 270 < th dose independent sin 8 NA
636 156.35 atmosphere 1000.0 10 > th dose dependent rect. 13 1
655 156.42 radiation 40.0 4320 < th dose dependent rect. 18 9
659 156.44 precipitation 0.1 30 < th dose independent rect. 3 23
662 156.44 precipitation 0.1 30 < th dose dependent rect. 3 23
663 156.45 humidity 90.0 10 < th dose independent rect. 13 1
709 156.53 radiation 10.0 4320 < th dose dependent rect. 18 9
718 156.58 wind 7.0 10 > th dose dependent rect. 13 21
728 156.65 temperature 15.0 30 > th dose dependent rect. 13 1
731 156.65 temperature 30.0 30 > th dose dependent rect. 16 23
742 156.69 radiation 10.0 30 < th dose independent rect. 10 5
772 156.79 wind 7.0 10 > th dose dependent rect. 13 9
811 156.84 temperature 30.0 270 < th dose independent rect. 1 13
826 156.91 wind 9.0 14400 < th dose independent rect. 3 1
849 156.95 wind 9.0 720 < th dose dependent rect. 14 1
861 156.99 atmosphere 1005.0 270 > th dose dependent rect. 23 4
881 157.07 radiation 1.0 14400 > th dose independent rect. 9 2
896 157.15 atmosphere 1015.0 270 < th dose independent rect. 19 14
914 157.21 temperature 10.0 10 > th dose independent rect. 13 1
916 157.21 atmosphere 995.0 10 > th dose independent rect. 13 1
917 157.21 atmosphere 1010.0 10 < th dose independent rect. 13 1
919 157.21 precipitation 0.1 10 < th dose independent rect. 13 1
921 157.21 temperature 10.0 10 > th dose independent rect. 14 23
923 157.21 precipitation 0.1 10 < th dose dependent rect. 13 1
926 157.23 radiation 40.0 90 < th dose independent rect. 13 1
928 157.23 radiation 30.0 43200 < th dose independent rect. 17 10
932 157.24 radiation 1.0 14400 < th dose independent rect. 9 2
954 157.28 temperature 25.0 270 > th dose independent rect. 23 4
955 157.28 wind 9.0 720 < th dose independent rect. 23 16
956 157.28 wind 9.0 10 < th dose independent rect. 14 23
976 157.31 temperature 10.0 1440 > th dose independent rect. 14 1
981 157.31 temperature 10.0 1440 > th dose independent rect. 15 23