Os04g0346100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein S27.
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Os04g0346100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein S27.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.32 | 0.349 | 10.6 | 1.33 | 0.79 | -0.356 | 0.997 | 0.9 | 0.116 | 16.1 | 19.8 | 4118 | -- | -- |
| 54.87 | 0.345 | 10.5 | 1.52 | 0.807 | -0.579 | 0.913 | -- | 0.175 | 16 | 19.17 | 2714 | -- | -- |
| 56.73 | 0.351 | 10.6 | 1.35 | 0.794 | -0.432 | -- | 0.829 | 0.124 | 16 | 19.9 | 2649 | -- | -- |
| 57.5 | 0.353 | 10.5 | 1.47 | 0.804 | -0.651 | -- | -- | 0.16 | 16 | 19.03 | 2586 | -- | -- |
| 91.62 | 0.446 | 10.6 | 1.34 | -- | -0.361 | -- | 0.868 | 0.113 | -- | 19.7 | 2952 | -- | -- |
| 61.31 | 0.367 | 10.5 | 1.77 | 0.774 | -- | 1.09 | -- | 0.283 | 16.1 | -- | -- | -- | -- |
| 64.64 | 0.377 | 10.5 | 1.79 | 0.779 | -- | -- | -- | 0.289 | 16.1 | -- | -- | -- | -- |
| 92.26 | 0.447 | 10.5 | 1.53 | -- | -0.56 | -- | -- | 0.16 | -- | 19.8 | 1722 | -- | -- |
| 71.66 | 0.394 | 10.6 | -- | 0.791 | -1.47 | -- | -- | -0.223 | 16 | 17.63 | 47520 | -- | -- |
| 97.7 | 0.462 | 10.5 | 1.75 | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
| 148.67 | 0.57 | 10.5 | -- | 0.745 | -- | -- | -- | 0.0903 | 16.1 | -- | -- | -- | -- |
| 105.72 | 0.479 | 10.6 | -- | -- | -1.44 | -- | -- | -0.226 | -- | 17.46 | 47520 | -- | -- |
| 178.84 | 0.624 | 10.5 | -- | -- | -- | -- | -- | 0.0738 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.19 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 2 | 51.39 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 3 | 51.43 | temperature | 20 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 6 | 51.68 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 8 | 51.88 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 13 | 52.00 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 14 | 52.01 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 5 |
| 31 | 52.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 32 | 52.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 62 | 52.68 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 71 | 52.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 93 | 53.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 101 | 53.17 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 127 | 53.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 128 | 53.33 | humidity | 90 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 146 | 53.42 | radiation | 40 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 162 | 53.42 | radiation | 40 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 181 | 53.44 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 185 | 53.46 | humidity | 90 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 237 | 53.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 251 | 53.77 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 328 | 54.08 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 370 | 54.19 | radiation | 30 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 396 | 54.24 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 422 | 54.30 | temperature | 20 | 4320 | < th | dose independent | sin | 19 | NA |
| 444 | 54.35 | temperature | 20 | 4320 | > th | dose independent | sin | 19 | NA |
| 469 | 54.40 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 475 | 54.42 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 480 | 54.43 | humidity | 90 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 518 | 54.50 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 3 |
| 565 | 54.57 | humidity | 70 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 604 | 54.64 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 607 | 54.64 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 20 |
| 635 | 54.69 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 15 |
| 650 | 54.72 | wind | 1 | 43200 | > th | dose independent | sin | 15 | NA |
| 659 | 54.73 | wind | 1 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 664 | 54.74 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 667 | 54.74 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 692 | 54.77 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 735 | 54.86 | wind | 1 | 14400 | < th | dose independent | sin | 14 | NA |
| 779 | 54.91 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 782 | 54.91 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 825 | 54.96 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 826 | 54.96 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 833 | 54.97 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 843 | 54.98 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 22 |
| 845 | 54.98 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 858 | 55.00 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 888 | 55.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 906 | 55.04 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 932 | 55.05 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 22 |
| 943 | 55.06 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 974 | 55.07 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 21 |
| 980 | 55.07 | humidity | 60 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 998 | 55.09 | temperature | 15 | 4320 | > th | dose independent | rect. | 21 | 3 |